Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2136 |
Symbol | |
ID | 3972423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2333350 |
End bp | 2334120 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637925244 |
Product | trans-aconitate 2-methyltransferase |
Protein accession | YP_532009 |
Protein GI | 90423639 |
COG category | [R] General function prediction only |
COG ID | [COG4106] Trans-aconitate methyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000208135 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00294275 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCCGACT GGGACGCCGA GCAGTATCTG AAGTTCGAGG ACGAGCGCAC CCGCCCGGCG CGCGACCTGC TGGCGCAAAT CCCGCTCGAC GATCCGCGCA GGGTGGCGGA CATCGGCTGC GGTCCGGGCA ATTCCACCGA GCTGCTGGTG AGGCGCTGGC CGCAGGCCAG GGTCACCGGG GTGGACACCT CCGCCGACAT GCTGCGGCAG GCCCGCGAGC GGCTGCCCGG CCACAATTTC ATCGAGGCCA ATATCGCGCA TTGGGCGCCG CCGGTCGGCA CCGACGTGGT GTTCGCCAAC GCCGTGTTCC AATGGGTGCC GAACCATCTC AAGCACATGC AGCGGCTGGT GGGCGCGCTG GAGCCGGGCG GCGTGCTGGC GGTGCAGATG CCGGACAATC TCGACGAGCC GTCGCACATC ATGATGCGCG AGGTGGCGTT CCAGGAGCCG TGGCGGCATC AGCTCGCCGA GGCGGCGCAG CTGCGCGACA ACTTGCCGAA GCCGGGGGCC TATTACGACG CGCTGCGGCC GTTGTGCAGC CGGCTGGAGA TCTGGCACAC CGTGTATAAT CACGTGCTCG ACGATGCGAT GGCGATCGTC GAATGGGTCA AGGGCACCGG GCTGCGGCCG TTCATCGATC CTTTGGAACT GCCGGAACGC AAGGCCTATC TCGCGGCCTA CACCGCGCGG ATCGCCGCCG CTTATCCGCC GCAGGCCGAC GGCAAGGTGC TGCTGCGGTT TCCGCGGCTG TTCGTCGTCG CGATCAAGTA G
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Protein sequence | MADWDAEQYL KFEDERTRPA RDLLAQIPLD DPRRVADIGC GPGNSTELLV RRWPQARVTG VDTSADMLRQ ARERLPGHNF IEANIAHWAP PVGTDVVFAN AVFQWVPNHL KHMQRLVGAL EPGGVLAVQM PDNLDEPSHI MMREVAFQEP WRHQLAEAAQ LRDNLPKPGA YYDALRPLCS RLEIWHTVYN HVLDDAMAIV EWVKGTGLRP FIDPLELPER KAYLAAYTAR IAAAYPPQAD GKVLLRFPRL FVVAIK
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