Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2037 |
Symbol | |
ID | 3973956 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2219176 |
End bp | 2220516 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637925146 |
Product | secretion protein HlyD |
Protein accession | YP_531911 |
Protein GI | 90423541 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.35853 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAGGCTAT CGCGAAATAG ACTGCTATAT GGGGTGGCGT TGATCGTCGC GGCGACCAGC AGCGCCTACG TGCTCTTGAT CACCCGAAGC AACGGCGTCG GGATCAATGG CGCGATCCAC TATCGCACCG CGTCGGTCGA GCGCCGGCCG TTTGTCGCGG TGGTTCGCGC CAGCGGATCG CTGCAGCCGA TCTCCCAAGT CCTGGTCGGC TCGCAAGTGT CGGGGCAGGT GGTGGAGATT CTGGTCAAGC CGAACGACCA TGTCGAGCGA GATCAGGTGA TTGCCCGGAT CTCGTCCGAT CAGATCGGCA AGCGCTACCA GGGCCTGCTG GCGCAGCTGG CAAGCGCACG GGCCGACGTG TCGTTGCGGG AGGCGAGAGT GGAACTGTCG GCCGTGCAGG TGGAGCGGGC GCGATCGGAG GTGGCCGATC GGGAAGCCAA ACTGCGCAAT GCCGGCTTGG CCGAAGACAT CGCCGGACGG CAGCTGGCGC GGCGGCGGGA ATTGTCGAAG ACCGGCGCGA TCAGCGTCGC CGATCTCGAC TCGGTCACCG TGCAGTCGCG CCAGGCCGAG ACGACGACCG CGTCGGCGGA AGCCCAACTC GCCACCGCGC GGATCGCGGT GGATGCCGCG CGGCAGGAGC ACGAGATTGC CAGACGCGAG TTGGTGCTCG CAACCGCCAC GGTCGATATC CAGCAGTTGA AGGCCGAGGA GGCCGCGGTC GAACTGGAGC ACACCAATAT CGTCGCTCCG GTCCGCGGTG TGATCCTCCA GCGAACCGTA GAACTGGGCC AGACCGTCGC GGCCTCGTTC GCGACGCCGA CGCTGTTCAC CCTCGCCGAG AGCCTGGAAC GCATGGAGCT GCATCTGGTG ATCGACGAAT CCGCGGTGAA GCGCGTCCGC CGCGGACAGC AGGTGATTTT CTCGGTGCCG GCGCAGCCGC TACGCGAGCT GAAGGGGACG ATCTTGGCAA TCCGTGTGGC GCCGCAGATC AACCAGAACG TCGTCTCCTA CACCGCGCTG GTCAGCGTCG AGAATCCGGA CGGGGAGCTG TTTCCCGGCA TGACCGCGAC GGCTCGCATT CTAACCGACG AAATTCCCGA AGCGCTGGTG GTTCCGAACG CGGGGCTGCG CTGGCGACCG CCGAACGCCA AACCCGAGGA GCGTTCGACG CAGACGGTTT ACGTGCTGGA CCGCCCCGAC GCGCCTCGCC CGGTGCCGGT GGAGATCGGT GTCTCCGACG GCAGCGTGAC GACCGTGCTG GCGGGGGCCA TCCACGCCGG CGATCGCGTC ATCCTGGGAA CCGGCGCGGC CAACGGCGGT CCCCGGATCA GCCTGCAATG A
|
Protein sequence | MRLSRNRLLY GVALIVAATS SAYVLLITRS NGVGINGAIH YRTASVERRP FVAVVRASGS LQPISQVLVG SQVSGQVVEI LVKPNDHVER DQVIARISSD QIGKRYQGLL AQLASARADV SLREARVELS AVQVERARSE VADREAKLRN AGLAEDIAGR QLARRRELSK TGAISVADLD SVTVQSRQAE TTTASAEAQL ATARIAVDAA RQEHEIARRE LVLATATVDI QQLKAEEAAV ELEHTNIVAP VRGVILQRTV ELGQTVAASF ATPTLFTLAE SLERMELHLV IDESAVKRVR RGQQVIFSVP AQPLRELKGT ILAIRVAPQI NQNVVSYTAL VSVENPDGEL FPGMTATARI LTDEIPEALV VPNAGLRWRP PNAKPEERST QTVYVLDRPD APRPVPVEIG VSDGSVTTVL AGAIHAGDRV ILGTGAANGG PRISLQ
|
| |