| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2018 |
|---|
| Symbol | |
|---|
| ID | 3973918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2200079 |
|---|
| End bp | 2201545 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637925127 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_531892 |
|---|
| Protein GI | 90423522 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.650213 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAGT CGCCGTTCCT GCCGACCGTG GCAGCCTTAA GGTGGCTGGC CTTTAAGCGC
ATTCATCGAT CCATTGCGGT GTTGGCGGCG ACGCTCATTG GAGTCGTTAC CACAATCATG
TTGATCTGCG CCGCTGTGCT GGTGATCAGG CTCGGGGGCG ATGATGACGG GACGTGGGGC
GCCGCCGACG TGGGCGACGC TCTGAAAGAG GCTGTCGCGC GCGATGATCA AGGTCAATTG
GTGGTCAGGA AGACGGCGCG ATTGGAGGTG TTTGCGCGGC AGTTTCCGTC TTTTTGGTAC
ATCGTATCTG ACAAGATGGG GGAGGTTCGC TACGGGCCGA TACCTGATTG GCGCCCGCCC
AAAAATGCAC AGCATCAAAG CGGGACGAGC TTTCTAGCTT ACGCGATCGA CGGCGAGTCG
AAAACTCTCA AGAAAATGAC CGCGCTCAGA AACACGCCGG TTGGTGAGAT CTGGATCGAG
ACCGGCGGCG TGGCTTACAC CGCATCACAG CTGATGGTGG GAACGCTCAC CGATTCAGCT
TTCATTGCGC TTCCGGTCCT GCTCGTCCTG CTGGCGACCG CTCTGACCGC CCTGGTTTTC
GTACCCTGGG TGATCGCGCG GCCGGTTCTT GTTGTTGCAA GGAACGCCGA GATGATCGAC
GGGGTTCCTG ACGGCCGCCG CCTGCCGGAG GACGGCGCGC CGGCCGAGCT GTTGCCACTG
GTCGCGGCGT TCAATCGGGC GCTGTCGCGC ATCGATGTCG CGGCAAAGGC GCAACGGAGT
TTTCTGTCCA ATGCGGCGCA TGAACTGCGA ACCCCTTTGA CGAATGCTCG CACCACGATC
GAACAGGTAC AGGATCCCAG GCTTCGCGCC AGGCTCATTG CCGAGAACCA GAAACTCTCG
TCGATTGTCA CCATGCTCCT TCAACTTGCT CGGATTTCCG CAGAGGCTGC AGCCCTGACC
GGGATCGATC TTGTCGCGCT TGCCCGTAGG GTTGCGGCCG AACACGTGCC GATGGCCCTG
AAGCACGGCA GCGAGATCGC CTTTGTAGGA CCAGGCTGTC CCGTGTGGGT GCAGGGCTCA
GACCCTGCCA TCGCTGTGGC GCTTTCGAAC CTAATCCGCA ATGCGGTGCA ACATTCGGGG
GCAATTCACC CCATCCTGGT CAGCGTCGAT ACGCCGGCTA GCTTGAGCGT GGTTGATCGT
GGGTCCGGTC TGCGCTGCGG CGAACCGGAG GCCTTGTGGG AGCCTTTCAA GCGCGGGAAT
GCTGCCACCG AAGGCACGGG ACTTGGTCTC TCGATAGTCT CGCAAGTCAT GTCCACACAC
AATGGTAGCG TCGCAATCTG TGAGACGCCA GGAGGCGGAA CGACGGTAGA ATTGAGCTTC
CAGGTTGCGC ATCAGGCGAA GCCGCCCCCG AGCAAATCGA GGCAGGTCGT GCCGGTTTTG
TCCGGAGCCT CCACAAAGAT CCTGTAG
|
|---|
| Protein sequence | MPKSPFLPTV AALRWLAFKR IHRSIAVLAA TLIGVVTTIM LICAAVLVIR LGGDDDGTWG
AADVGDALKE AVARDDQGQL VVRKTARLEV FARQFPSFWY IVSDKMGEVR YGPIPDWRPP
KNAQHQSGTS FLAYAIDGES KTLKKMTALR NTPVGEIWIE TGGVAYTASQ LMVGTLTDSA
FIALPVLLVL LATALTALVF VPWVIARPVL VVARNAEMID GVPDGRRLPE DGAPAELLPL
VAAFNRALSR IDVAAKAQRS FLSNAAHELR TPLTNARTTI EQVQDPRLRA RLIAENQKLS
SIVTMLLQLA RISAEAAALT GIDLVALARR VAAEHVPMAL KHGSEIAFVG PGCPVWVQGS
DPAIAVALSN LIRNAVQHSG AIHPILVSVD TPASLSVVDR GSGLRCGEPE ALWEPFKRGN
AATEGTGLGL SIVSQVMSTH NGSVAICETP GGGTTVELSF QVAHQAKPPP SKSRQVVPVL
SGASTKIL
|
|---|
| |