Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1940 |
Symbol | |
ID | 3973572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 2109082 |
End bp | 2110551 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637925051 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_531816 |
Protein GI | 90423446 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCCTT CGCCGTTGCG CCACGCGGTG AGATTTTTCG CGAGCGGAAT CGGCGGCTGC GGTCGGCTCA GGATGATGGC GTCCCGGGCA GTTTCGCCGC TGGCGGGCCT ACTGATCTTG TTTGCCGTCT GCGCGCCCCC CGCTTCCGCC CAAACGCCGC CGCCGCCCGG TGGGTCTGAG GACAACGCCG TCTCCAAGTC CGTCGAGGTC GATCCGACCG CCGGCGATCG TGCGATCGCC AACCGCATCG AACGCATCCT GCAGTCCACC AACTGGTTTG ATGGGCCCAA GGTCGCGGTG CGGGACGGCG TGGTCTTCAT CGACGGCAAG ACGCAAACCC AGGAACACCG GCGTTGGGCC GGCACCCTGG CGCAGAATAC CCAGGGCACC GTCGCGGTGG TCAACCGGAT CGCCGTCGAG GCCGACGTCG GATCGACCTT CGGACGCGCC GGCGACGAGT TCGTCAGGCT GTATCGGCAG GCAGAGCAAG CTTGGCCGTG GATCCTGCTC GCCGTCGTCA TCATCCTCGT CACCTGGCTG GTGGCGCGTC TGGTCGGATT TCTGGCGAAC CGCTTCGTCG CGCGGCGGGT GACGTCATCG CTGCTGCGCG CCGTGATTGT CCAGGCGTTT TCGATTCCGG TGTTTCTGCT CGGGGTGTAT TTCGTGCTCC AGGTCGCCGG CCTGACGCGC CTCGCCATCA CGGTGCTCGG CGGCACCGGG CTGTTCGGCA TCATCGTCGG TTTCGCGTTT CGCGAGATCG CCGAAAATTT TCTCGCCAGC ATCCTGCTCA GCGTCCGCAA CCCCTTCAGC ACCGGCGACC TGATCGAAGT CGCCGGCAAC ACCGGGATCG TGCAAAATCT CAATGCGCGG AGCACGGTGC TGCTGACGCT GGCCGGCAAC TACGTCCAGA TCCCGAATGC CATCGTGTTC AAGAGCACGA TCACCAATTA CAGCAGCACG CCGAGCCGGC GCGCGACCTT CGCCATAGGA ATCAGCTACG CCGCCTCCAC CAGCAAGGCG CAGACGCTGA TCGCGGAGGT GCTCGCGCAA CATCCCGCCG TGCTGCGCAC GCCGGAGCCG CTGGTGCTCG TCGAGGAGCT CGGCGCCACG ACCATCAACC TGCGGGTGTA TTACTGGTTC GCCAGCGCGA CCTATTCGCC GGCCAAGATC AATTCAGCGC TGTTGCGCCT TGTCAAAGAT GCGCTGCTGA GCGGCGGGAT CGCGCTTACG GAATCCGCTG CCGCGGCGGC GAAAGGCGAA CCGGTTGTCG ATGCCGACGG CGACGACGTT CGATCTCGGC ACGCGGTCGG CAAATCTGCC GCCGACGAGG AGCGAAGTCC GTCTACGCCC GCCGAGGGCG ACCTGCGTAA CGAAACCAGT GAGATCTGTG AGCGCTCATC CCAAGGCCGG CCGCCGGAGG CTGAGGAAAA TCTGCTCAAG CCGCAAGCTG CTCCTCAGCG TGGCATTTGA
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Protein sequence | MIPSPLRHAV RFFASGIGGC GRLRMMASRA VSPLAGLLIL FAVCAPPASA QTPPPPGGSE DNAVSKSVEV DPTAGDRAIA NRIERILQST NWFDGPKVAV RDGVVFIDGK TQTQEHRRWA GTLAQNTQGT VAVVNRIAVE ADVGSTFGRA GDEFVRLYRQ AEQAWPWILL AVVIILVTWL VARLVGFLAN RFVARRVTSS LLRAVIVQAF SIPVFLLGVY FVLQVAGLTR LAITVLGGTG LFGIIVGFAF REIAENFLAS ILLSVRNPFS TGDLIEVAGN TGIVQNLNAR STVLLTLAGN YVQIPNAIVF KSTITNYSST PSRRATFAIG ISYAASTSKA QTLIAEVLAQ HPAVLRTPEP LVLVEELGAT TINLRVYYWF ASATYSPAKI NSALLRLVKD ALLSGGIALT ESAAAAAKGE PVVDADGDDV RSRHAVGKSA ADEERSPSTP AEGDLRNETS EICERSSQGR PPEAEENLLK PQAAPQRGI
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