| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1874 |
|---|
| Symbol | |
|---|
| ID | 3973391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2044482 |
|---|
| End bp | 2045189 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637924985 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_531750 |
|---|
| Protein GI | 90423380 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.418938 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACC AAACACATCT CGTCGTTGTC GATGATGAGC CGGTGGCTCG TGAATCCCTT
GCGGCCTATC TGGAGCGCGA AGGCTTTCGC GTCACGATGG CCGAAGACAT CCGCGGCTTG
CGCGGCGTTC TCGAACACCA GAAAGTCGAT CTGGTGCTGC TCGACATTCG TCTTCCGGGC
CAGGACGGCT TGAGCTTTTT GCGTGAGCTA CGCTCGCGGT CCAATCTGCC GGTGATCTTC
GTCACCGGCC GAGTCGATGA AATCGATCGC GTGCTCGGGT TAGAACTCGG CGCCGACGAT
TACGTCACCA AGCCGTTCGG CCACCGCGAA CTGCTGGCGC GGGTCCGCAC CCTGCTGCGC
CGCACTTCGG AGAGCTACCG ACTGGAACAC AACAACCTCG CGCGGCACTT TGCGGGTTGG
ACTCTCGATC TGTCGCAACG CTGCCTGACG GATGCGCATG GTGAGGATGT CCGGCTCACC
CGTGGCGAGT TCGACATCCT GGCGGCGCTG GTCCGACGCC CCGGGCAAGT GCTGTCCCGC
GACGCTCTGC TCGACGAAAG CGTCCATCGC GACGGCGCGC CGAACGATCG CACGGTCGAC
GTGCTGATCG CCCGCCTGCG CCGCAAGATC GAAACCGATC CGGCAATTCC CCGCCTGATC
ATCACCGAGC ACGGCTTGGG TTATCGGTTC GTCGGGCCCG TGCACTGA
|
|---|
| Protein sequence | MINQTHLVVV DDEPVARESL AAYLEREGFR VTMAEDIRGL RGVLEHQKVD LVLLDIRLPG
QDGLSFLREL RSRSNLPVIF VTGRVDEIDR VLGLELGADD YVTKPFGHRE LLARVRTLLR
RTSESYRLEH NNLARHFAGW TLDLSQRCLT DAHGEDVRLT RGEFDILAAL VRRPGQVLSR
DALLDESVHR DGAPNDRTVD VLIARLRRKI ETDPAIPRLI ITEHGLGYRF VGPVH
|
|---|
| |