Gene RPC_1873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1873 
Symbol 
ID3973390 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2041757 
End bp2044528 
Gene Length2772 bp 
Protein Length923 aa 
Translation table11 
GC content66% 
IMG OID637924984 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_531749 
Protein GI90423379 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.689502 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTCAAAC ACTCGCTGGC AAAATTGGTC CTGGTGCTGC ACTGGACCTC GATCCTGGCT 
TTGGTCACCA TCACCTCGCT ATTGGCTGCG CAGGAATGGT TCGCCTTCGT CGACGCCGAC
CGCATCGTGG TTTTGACCCG CGCCGATCGC GTGCTGTTCA ATTCGATGAC CGGGATACGT
TTCGAAGTCG GTGTCGCCGG CGTCGCGGTG CTGTCGCGGG ATCAGCCGGA CGCGATGGTC
GAGGCGTCGA ACCGCAAGGT TGACGGCCTC TTTGCGGAAG CAATGGCGGC GATCGACGCT
TCCAAGCTCG AGCGACGTGA CGCGTTGTTG GCGGCGTCGC GCGACGCCTA TGCCGACCTC
GAACGCAGCC GGCCGCTGCT GTCGGCGATA ACGGCGCAGC CTTTGCCGGC CCGCGACATG
GCGACCGCCG ATCCCTGGCT GATGGCGATG TACAACGTCG CTGAGCGGCT GCAGGAAGCC
TCGATCGCGG TCGGCAACGA CGCGCGCATG CTCGATTCCG AGATCGCCGA ACTGGTGCAA
TTGCGGCAGG CGTCCTACGT CATCCGCGAA CGTTATGGAC GTCCGTGCTC GGCGTTGCGG
GCCAATGTGC AACGCAGCCT GCCGCTCGAC CGTGAAAAGC TCGCCAATTG GCGCGAAGGG
GTCGGGGAGT ACACCGCGCG CTGGCGCTAT CTCGAATCCT ATCTCAGCCG GCCCGGGGCG
TCGCCACAGC TGGTCGAGGA CGTGATCAAC GGCCGCATCG CCACGGAAAT CGTGCAGAAG
CGCATGGACG AGGTGCTGTA CGGCCTCGAC GGCTCAGGCT TGCCGGCGAT GCCGGCCGCC
GAATGGTCGG AGCTGTGCGT CACCGCCTAT GACCCGATTC TGAAACTCGG CAACGATGCG
CTCGATCAGG CGATCGCCCA CGCCGAAGAC CGCAAGACCA GAGCTTCGCT GATGCTGCTG
GCGATGGCGG TCGTCGCGGT GGCGGGCATT CTTTTGGTCG GCTTCTGGAT TCAGACGGTG
CGGCGCCGGC TGTCGACGCC GATGAAGATG CTGGTCGACA CCATCGGCCG GCTGTCGCGT
CAGGAGTTCG CATTGCCCGT TCCCGCCACC GGCTATCCGG ACGAGATGGG GGCGATGGCC
GGGGCGCTCG AGGAACTACG CGTCGGCGCG TTGAAGGCGC AGCATCTGCA GCGGCTGTTG
GAGAAAGCCC AGGAGGTCGA GATCGAACGG GCCAACGAGG TCAGCCGCGC CAAGACCGAC
TTCCTCGCCA CCATGAGCCA CGAGATCCGC ACCCCGTTGA ACGGCATTCT CGGCATGGCG
CAGTTGCTGG ACGACAGCCC GCTGTCGGCG CAACAACGCC AATGGCTGGA TGCCGTCGCA
CAATCCGGCT CGCTGCTGCT CGCGATCCTC AACGACATTC TCGACCTGTC CAAGATCGAG
GCCGGCCGCA TGGAACTGGA GTCGATCGCG TTCAGCCCCG ACGAACTGCT GCGCACCATC
GCCGCGGCGA TGACGCCGCA GGCCGCCGGC AAGGGGCTGG CGTTCCTCAC CGAATATCCG
GCTTTGCCGG CACGGCTGAT CGGCGACCCC GCGAAGATCA GCCAGGTGCT GCTCAATCTG
GTGGGCAACG CCGTCAAGTT CACCCATTCG GGAGAGGTGG TGCTGAGCGT CAACTGGGCG
CCCGACGAGC AACGGCCGGA TCGGGGGCGA ATGGAATTCC GAGTCACCGA CACCGGCATT
GGCATCGCCC GCCAGGCCGT GCCGCATGTG TTCGACCCGT TCTCGCAAAG CGACTCCTCG
ATCACCCGCC GGTTCGGCGG CAGCGGATTG GGGCTCGCGA TCTGCAAGCG CATCATCGAC
GCGATGGGTG GCAAGATCAC CGTCGAAAGC ACGCTCGGCT GCGGCAGCGT CTTCACCGTG
GTGTTGGATT TCGCAATAGC GCGGCCGTCG CTGCGCGGCG CGGCAACGAC CGCCGCGTTC
GAAGCGATGC CGCAATTGTC GATCCTCTTG GCGGAAGACA ACGAGGTGAA TGCCGCGGTG
GCCCGCGCCA TGTTGGAGAA GATGGGGCAT ACGGTCGACC ATGCGTCGCA CGGCCTCACC
GCGGCGGCTC TGGCCGGCCA GCATGACTAC GACATCGTGC TGACCGATCT GGCGATGCCC
GGTCTCGACG GCATCGGATT GGCGAAGGCG ATTCGTGGGC TGCCGCACGC CACCCGCCGC
GAAGTGCCGA TCATCGCGAT CACCGCCAAC GTGTCCGCAG GCCGTATCGA GCAGTGTTTC
GCCGCCGGCA TGACCGGCTA CATCGAGAAG CCGTTCCGGC AGGAGACGTT GCGGCAGGCG
CTGGCCGACG CCGTCGGCGC GCTGGAGGAC GAAGGCGTGC CGCAGTCCGC CCGCACCGGA
TCGCTGCTGG AGCAGCGTTG CGACGATCTC GGCGAGGAAA AGACCGGTTA CATCATCGAC
CTGTTCGTCT CCACCGCGCC GTCGCTGCTG GCAGAAACAA GCCGGGCGCT TCAGGCCGGC
GATGCGAGGG CGTTCGGCGA TGCCGCCCAC CGGCTGAAGA GCGCGGCGGG AAACGTCGGG
CTCAACCATC TGGCGCGGCT GGCGCAACTC GCCGAGCGCG CGGCGGCGGC GAACGACCAC
GGCGCGATGC GGCGCTGCGC GCGGGCGATG GCGGCGAAAG CCCCCGGCAA GATCGAAGGC
TTGAAGCGTT CCTGGGCCGC CGTGCTCAGT GCACGGGCCC GACGAACCGA TAACCCAAGC
CGTGCTCGGT GA
 
Protein sequence
MFKHSLAKLV LVLHWTSILA LVTITSLLAA QEWFAFVDAD RIVVLTRADR VLFNSMTGIR 
FEVGVAGVAV LSRDQPDAMV EASNRKVDGL FAEAMAAIDA SKLERRDALL AASRDAYADL
ERSRPLLSAI TAQPLPARDM ATADPWLMAM YNVAERLQEA SIAVGNDARM LDSEIAELVQ
LRQASYVIRE RYGRPCSALR ANVQRSLPLD REKLANWREG VGEYTARWRY LESYLSRPGA
SPQLVEDVIN GRIATEIVQK RMDEVLYGLD GSGLPAMPAA EWSELCVTAY DPILKLGNDA
LDQAIAHAED RKTRASLMLL AMAVVAVAGI LLVGFWIQTV RRRLSTPMKM LVDTIGRLSR
QEFALPVPAT GYPDEMGAMA GALEELRVGA LKAQHLQRLL EKAQEVEIER ANEVSRAKTD
FLATMSHEIR TPLNGILGMA QLLDDSPLSA QQRQWLDAVA QSGSLLLAIL NDILDLSKIE
AGRMELESIA FSPDELLRTI AAAMTPQAAG KGLAFLTEYP ALPARLIGDP AKISQVLLNL
VGNAVKFTHS GEVVLSVNWA PDEQRPDRGR MEFRVTDTGI GIARQAVPHV FDPFSQSDSS
ITRRFGGSGL GLAICKRIID AMGGKITVES TLGCGSVFTV VLDFAIARPS LRGAATTAAF
EAMPQLSILL AEDNEVNAAV ARAMLEKMGH TVDHASHGLT AAALAGQHDY DIVLTDLAMP
GLDGIGLAKA IRGLPHATRR EVPIIAITAN VSAGRIEQCF AAGMTGYIEK PFRQETLRQA
LADAVGALED EGVPQSARTG SLLEQRCDDL GEEKTGYIID LFVSTAPSLL AETSRALQAG
DARAFGDAAH RLKSAAGNVG LNHLARLAQL AERAAAANDH GAMRRCARAM AAKAPGKIEG
LKRSWAAVLS ARARRTDNPS RAR