| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1872 |
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| Symbol | |
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| ID | 3973389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2039937 |
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| End bp | 2041466 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637924983 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_531748 |
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| Protein GI | 90423378 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGACGC TGGCAAGGCC GCAAGGCGAC CGGACCACGG GGCAGGCTCG CCGTCGATTT
GCGAGGCCGC TGGCGACGCT GGTTGTGGCA GCCACGATGC TCGCCGGGTG CGCCGTCGGT
CCGGATTACG GCCCACCCGG GATCGAGCTT CCGACCGCCT GGGCCAATGC CAAGCCGCCG
CGCACGGCGC CGCCGGTCGC CGATCTGCGG CAATGGTGGC GGCGGCTGAA CGACCCGCTG
CTCAGCCGGC TGATCGAGGA GGCGGTGGAA AGCAACCTCA GCGTCGCCAG CGCCAAGGCG
CGGATCCGCG AAGCGCGCGC CACCAGGCGC CAGGCGATCG GCGCGCTGTT TCCGTTGCTC
AATGGCACCG GTTCGGCGAC CCGCAACCAG GTCAGCGCCA GCAGCACCAC GAGCGGCCAG
GCGCTGACGT CCACCTACAA TCAGTTTCAG GCCGGCTTCG ATGCCAGCTG GGAGCTCGAC
ATTTTCGGCG CCAACCGCCG CGGCGTCGAG GCCACCAGCT ACGGCGTCGA TGCGGCGGAG
GACGATTTGC GCGCCACCTT GCTGACGTTG GTCGGCGACG TCGCGGCGTA CTACGCCGAG
GCGCGCGGCT ATCAGGCCCG CATCGCCTTG GCGCGCCGCA CCGCCGCCTC GCAGCGCGAA
ACCGCGGCGC TGACGCAACG CAAGTTCGAC GCCGGCTCGT CGTCGGCGGT GGATGTCGCC
AAGGCGTCCG CGCAGGCCGC CACCACCGAG GCCAATATCC CGACCTATCA GGTCGGCTAT
TCCGAGGCGG TGCATCGGCT CGGCGTGTTG CTGGGCCGCG AGCCGACCGC GTTGGAGCAG
CAACTCGCGC GCGGCACCGC GATTCCGTCG CCGCGACTGC CGCTACCGAA GGGCATTCCG
GCCGACGTGC TGGTGATGCG GCCGGACGTG CGCAAGGCCG AGCGGCAGCT CGCGCAATAC
ACCGCCAAGA TCGGCCAGGC CGAGGCCGCG CTGTATCCGA GCGTCAGCCT GACCGGCTCG
GTTTCCACCT CGGCGCTGAA GATCGGCGAC CTCGCCAAGA ACTCGACGAT CGGCTGGTCG
GTCGGGCCGA CGCTCAGCGT GCCGATCTTC AACGGCGGAC AATTGCGCGC CGCGGTCGAG
ATCAGCGAAG CGCAGCGCGA CCAATACTAC GTCGCCTGGC GCAGCGCCGT GCTCACCGCG
CTGGAAGACG TCGAGAACGC CATCGTCGCA TTGGCGCAGG AGCAACTGCG AATTCGAAGT
CTTGCGGAAG CCAGCCGCCG CTATCGCGAT GCCGCGCGGT TGTCGCGATC GCTCTACGAG
ACCGGATCGT CGAGCTTCCT CGACGTGCTC GACGCCGAGC GCTCGTTGTA CACCGCCGAG
GATTCGCTGC TGCAGAGCCG CGTCACGGTC GCGACCAGCT TCATCGCGCT GGCCAAGGGG
CTCGGCGGCG GCTGGGACGG CGCCATCGAC AGCTCAAGGC CTGACGTGAT CGACGTCAAC
ACCGGGCCGC ATCTGGCGGT CGCCCAATAG
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| Protein sequence | MMTLARPQGD RTTGQARRRF ARPLATLVVA ATMLAGCAVG PDYGPPGIEL PTAWANAKPP
RTAPPVADLR QWWRRLNDPL LSRLIEEAVE SNLSVASAKA RIREARATRR QAIGALFPLL
NGTGSATRNQ VSASSTTSGQ ALTSTYNQFQ AGFDASWELD IFGANRRGVE ATSYGVDAAE
DDLRATLLTL VGDVAAYYAE ARGYQARIAL ARRTAASQRE TAALTQRKFD AGSSSAVDVA
KASAQAATTE ANIPTYQVGY SEAVHRLGVL LGREPTALEQ QLARGTAIPS PRLPLPKGIP
ADVLVMRPDV RKAERQLAQY TAKIGQAEAA LYPSVSLTGS VSTSALKIGD LAKNSTIGWS
VGPTLSVPIF NGGQLRAAVE ISEAQRDQYY VAWRSAVLTA LEDVENAIVA LAQEQLRIRS
LAEASRRYRD AARLSRSLYE TGSSSFLDVL DAERSLYTAE DSLLQSRVTV ATSFIALAKG
LGGGWDGAID SSRPDVIDVN TGPHLAVAQ
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