Gene RPC_1841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1841 
Symbol 
ID3971721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1996874 
End bp1998460 
Gene Length1587 bp 
Protein Length528 aa 
Translation table11 
GC content67% 
IMG OID637924954 
Productpeptidase S1C, Do 
Protein accessionYP_531719 
Protein GI90423349 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGATC GCCCCACCGA ATTGTCCTCG CTGCCGTCCT ATCGGCCGTT GCGCCGCTCG 
CTGTTCTCGG CGCGCAAGTT TGCGCTGATG GCGTCGGTGG TCGCAGGCCT CGGCGCCGGC
CTCTATGGCC TCAGCCCCGC GCCAGACCAT TTCAATGTGC TCAGCACCGC CGCCCACGCC
CAGGTCAACA ACGAGGTGCG CAAGGTGGCG CAGCCGGTCG GCTTCGCCGA CATTGTCGAG
CGGGTGAAGC CCTCGGTGAT TTCGGTCAAG GTCAACATCA ACGAGAAGGT CGCCAAGAAC
GACGACAGCG CCGAGGATTC GCCGTTCCAG CCAGGCTCGC CGATGGAGCG CTTCTTCCGT
CGCTTCGGCG GCCCGGATGG CATGCCCCCT GGATTGCGCG GCGGTCGTGG CGGCCGCGGC
GCGGTGACCG GGCAAGGCTC CGGCTTCTTC ATCTCGGATG ACGGCTATGC GGTCACCAAC
AACCACGTGG TCGATGGCGC CGATAAGGTC GAAGTCACCA CCGACGACGG CCGTACCTTC
AAGGCCAAGG TGATCGGCAC CGATCCGCGC ACCGATCTGG CGCTGATCAA GGTCGAAGGC
GGCAACAATT TCCCGTTCGC CAAATTGGCC GAAGGCAAGC CGCGGATTGG CGACTGGGTG
CTCGCCGTCG GTAACCCGTT CGGGCTCGGC GGCACCGTGA CCGCCGGCAT CGTCTCGGCC
TCTGGCCGCG ACATCGGCAA CGGCCCCTAT GACGATTTCA TCCAGATCGA TGCCCCGGTG
AACAAGGGCA ACTCGGGTGG ACCGGCGTTC GACACCTCCG GCGAGGTGAT GGGCGTCAAC
ACCGCGATCT ATTCGCCGTC CGGCGGTAGC GTCGGCATCG CGTTCTCGAT CCCCGCTTCG
ACCGTGAAGA CGGTGGTCGC CCAGCTCAAG GACAAGGGCT CGGTCAGCCG CGGCTGGATC
GGCGTGCAGA TTCAACCCGT GACCCAGGAG ATCGCCGACA GCCTCGGCTT GAAGAAGGCC
GACGGCGCGC TGGTCGCCGA GCCGCAGGCT GACGGTCCGG CCGCCAAAGC CGGCATCCAA
TCCGGCGACG TCATCACCGC GGTGAACGAC ACCCCGGTCA AGGATGCCCG TGAACTCGCC
CGCACCATCG GCGGCTTTGC GCCGGGCAAC TCGGTGAAGC TCAACGTCAT CCACAAGGGC
CAGGACAAGG TGGTCAACCT CACTCTCGGG CAGTTGCCGA ACACGATCGA AGCCAAGGCC
GATGTCGACC GCGGCGATCA CGGCGACGCC AAGCGGGGCT CCGACATTCC GCGGCTCGGC
CTGACGCTGG CGCCCGCCGG CACCGTAGCC GGCGCCGGCA AGGATGGCGT TGTCGTCACC
GAGGTCGACC CGAAGAGTGC GGCCGCCGAG CGCGGCTTCA AGGAAGGCGA CGTCATTCTG
GAAGTGGCCG GCAAGAGCGT CGCCAGCCCG ACCGAGGTGC GCGAAGCCCT GGCGTCGGCG
AAGACCGAGA ACAAGAACAG CGTGCTGATC AGGGTTCGCA GCGGTGGCTC GTCGCGTTTC
GTGGCGGTGC CGTTGGCAAA GGGCTGA
 
Protein sequence
MTDRPTELSS LPSYRPLRRS LFSARKFALM ASVVAGLGAG LYGLSPAPDH FNVLSTAAHA 
QVNNEVRKVA QPVGFADIVE RVKPSVISVK VNINEKVAKN DDSAEDSPFQ PGSPMERFFR
RFGGPDGMPP GLRGGRGGRG AVTGQGSGFF ISDDGYAVTN NHVVDGADKV EVTTDDGRTF
KAKVIGTDPR TDLALIKVEG GNNFPFAKLA EGKPRIGDWV LAVGNPFGLG GTVTAGIVSA
SGRDIGNGPY DDFIQIDAPV NKGNSGGPAF DTSGEVMGVN TAIYSPSGGS VGIAFSIPAS
TVKTVVAQLK DKGSVSRGWI GVQIQPVTQE IADSLGLKKA DGALVAEPQA DGPAAKAGIQ
SGDVITAVND TPVKDARELA RTIGGFAPGN SVKLNVIHKG QDKVVNLTLG QLPNTIEAKA
DVDRGDHGDA KRGSDIPRLG LTLAPAGTVA GAGKDGVVVT EVDPKSAAAE RGFKEGDVIL
EVAGKSVASP TEVREALASA KTENKNSVLI RVRSGGSSRF VAVPLAKG