| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1805 |
|---|
| Symbol | |
|---|
| ID | 3972070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1962048 |
|---|
| End bp | 1963298 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637924918 |
|---|
| Product | phage major capsid protein, HK97 |
|---|
| Protein accession | YP_531683 |
|---|
| Protein GI | 90423313 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
|---|
| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.539863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.129536 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCT ACGCCGACGA TCACGCCCCG GAAACCAAGG CCGGCATCGC CGTCGACGCG
CAGGACGAGC TGCGCGCCAC CTTCGAGGAT TTCAAATCCG CCAATGACGA GCGGCTGGCG
GAGCTGGAGC GCCGCCGCGG CGACGTGCTG TTGGAGGAGA AAGTCGACCG CATCAACGCC
GCGCTCGACG CCCAGCAACG CAAGCTCGAC GAGCTCGTGC TGCGCCAGGC CCGGCCGCAG
CTCGAGGGCC GCGGCAAGAA CGCCGGCGAT GTCGCCGGCC GCGAGCACAA GAGCGCGTTC
GAGGCCTACG TCCGTGGCGG CGACGCCGCG CCGCTGCGCG CGCTGGAAAG CAAGGCGATG
TCGGTCGGCT CCAATCCGGA CGGCGGCTAT CTGGTGCCGG TGGAGCTGGA AACCGCGATC
GGCGAGCGGC TGGCGGTGAT TTCGCCGGTG CGCGGGCTGT CCGCGGTGCG GACGATTTCC
GGCAGCGTCT ACAAGAAGCC GTTCATGACC GCGGGCCCGG CCACCGGCTG GGTCGGCGAG
ACCGACGCCC GCACCCAGAC CGCCTCGCCG ACGCTCGATG CGCTGTCGTT TCCGGCGATG
GAGCTCTACG CCATGCCGGC GGCGACCGCG ACGCTGCTGG AGGACTCGGC CATCAATCTC
GACGAGTGGC TGGCCTCCGA GATCGACCAG GTGTTCGCCG AGCAGGAGAG CACCGCCTTC
GTCAACGGCG ACGGCATCAA CAAGCCGAAG GGTTTTCTGG CCTATCCGAC GGTGGTCAAC
GCGACCTGGA GCTGGGGCAA CATCGGCAGC ATCCTGTCCG GCGCCGCCGG CGGCTTTGCG
GCGCAAAATC CCTCCGACGT GCTGGTCGAC CTGATCTACG CGCTGAAGGC CGGCTATCGG
CAGAATGCCA GCTTCGTGAT GAACCGCCGC ACCCAGGCCG CGATCCGCAA GTTCAAGGAC
TCCACCGGGG TCTATCTGTG GCAGCCGCCG GCGCAGCCCG GCGGCCGCGC CAGCCTGATC
GGCTTTCCGC TGGCCGACGC CGAGGACATG CCGGATATCG CGGCGAACTC GCTGTCGATC
GCGTTCGGCG ATTTCCGCCG CGGCTACCTG ATCGTCGACC GCCAGGGCGT CCGCGTGCTG
CGCGATCCGT ATTCCGCCAA GCCCTACGTG CTGTTCTATA CCACCAAGCG GGTCGGCGGC
GGCGTGCAGG ACTTCGACGC CATCAAGCTG CTGAAGTTCG CGGCGGGGTG A
|
|---|
| Protein sequence | MSIYADDHAP ETKAGIAVDA QDELRATFED FKSANDERLA ELERRRGDVL LEEKVDRINA
ALDAQQRKLD ELVLRQARPQ LEGRGKNAGD VAGREHKSAF EAYVRGGDAA PLRALESKAM
SVGSNPDGGY LVPVELETAI GERLAVISPV RGLSAVRTIS GSVYKKPFMT AGPATGWVGE
TDARTQTASP TLDALSFPAM ELYAMPAATA TLLEDSAINL DEWLASEIDQ VFAEQESTAF
VNGDGINKPK GFLAYPTVVN ATWSWGNIGS ILSGAAGGFA AQNPSDVLVD LIYALKAGYR
QNASFVMNRR TQAAIRKFKD STGVYLWQPP AQPGGRASLI GFPLADAEDM PDIAANSLSI
AFGDFRRGYL IVDRQGVRVL RDPYSAKPYV LFYTTKRVGG GVQDFDAIKL LKFAAG
|
|---|
| |