| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1779 |
|---|
| Symbol | |
|---|
| ID | 3972218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1932254 |
|---|
| End bp | 1934092 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637924892 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_531657 |
|---|
| Protein GI | 90423287 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.546306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0258189 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGTGT CGACCATCAT CCGCGATTGC CTGGATACGC TGTTGCACCC GTCGGCGCGC
TACGACGCGC TGATCAGCGC CCGGCATCGC GCATTCATCG CGCCGCGGCT GTTCGGCAGC
CTCGCGGCGC TGGCGGCGTT TCCGGTCTAT CTGGCGATCC ACGGCGCCCC GGCCGGCCTT
GAGGTCGCGG CGTTCGCCTG GCTGATCGCG CCGATCCTGT TGTCCTATTT CCTGTCGCGC
ACCGGGCGCT ACGAGAGCGC CAACATTCTC TCGGCGCTGG CGATGGCTGG ACTGATCATG
GCGGTCGCGA TCAACACCGG CGGCATCGAA TCCTTCGCGG CGATCTGGCT GGTGGTGATT
CCGCTCGAAG CGGCGCTGTC GGCGTCGCGC CGCGTGGTGG CGTTCGCCTC TGCGCTGGCG
CTCGGCTGCG CGGCGGCGCT GATCGCACTC AATCATTTCG AGGCGCTGCC GGTGTCGCAG
GCCTCCGCCA GCCATGGCAC GATGATGGCG ATCGGCATCG CCTCGGCGCT GCTCTATGCC
TGCGGCCTGG CTTACGGCAC GGAATCGCTG GCGCGCACCA GCGTCGCATT GCTGTACGAC
GAAGAGGATC GCTATCGGCT GTTGGCCCGC AACATGAGCG ACGTGATCTC GCGCCACGCC
CGCAACGGCG CGGTGCTGTT CGTCTCGCCC GCCGCCGAGC CGCTGCTCGG CGTGCCGGTG
TCGCGGCTGC TCGGCCACGG CCTGTTCGAT CGCGTGCACG TCGCCGATCG CCCGGCGTTT
CTCACCGCGT TGTCCGACGC CGGGCGTGGC GGCGAAGCAC GCAGCGTCGA GTTCCGGATT
CGTCGCGATG TCCCGCGCGG CGACCGCGGC CGCTGCAACA CCGCGGATTT CATCTGGCTG
GAAATGCGCT GCCGGCCGCT GGAGCCGTCC GCCAAGAACG CCACGTCGGA AGCCGAGGTC
GTCGCGGTGA TGCGCGACGT CACCGACCGC AAGGAGCAGG AGCAGGCGCT CGAACTGGCG
CGCGCCGCGG CCGAACGCGC CGATGCGTCG CGCAGCCATT TCCTCGCCAC CATGAGCCAC
GAGCTGCGCA CGCCGCTCAA CGCCATCATC GGCTTCTCCG AGATGATCGT GCAGGAAGAC
GTGCTGATGA TCAGCGCGGC GCGCCGCAAG GAATACGCGC AGCTGATCAA CGATTCCGGG
CAACATCTGC TGTCGGTGGT CAACGGCATC CTCGACATGT CGAAGATGGA GTCCGGCAAG
TTCGAGATTT TGCCGGAGCC GTTCGCGCCG AGGCCGGCGC TGCTGAATTG CTGCAACCTG
TTGGCGCTGA AGGCGCGCGA GAACGAAGTC GATCTGGTCA CCCGCGCGCC GGAGAACCTG
CCGCAGCTCA CCGGCGATCC GCGCGCGTTC AAGCAGATCG TGCTCAATCT GGTTTCCAAC
GCCATCAAGT TCACCGAGCG CGGCGGCACC GTCACGGTGT CGGCGGCGGT CGAGGGCGCC
AGGCTCGCGC TGCGCGTCAG CGACACCGGG GTCGGCATCG GCGCCGACGA TCTGAAGCGA
ATCGGCGAGG CGTTTTTCCA GGCCAGCAAG AGCTATCATC GGCGTCACGA GGGCACCGGC
CTCGGGCTGT CGATCGTCAA GAGCCTGGTG GCGCTGCACG GCGGCGAGAT GAGCGTCGAG
AGCAAGCTCG ACGAAGGAAC CACGGTGACG GTGATGCTGC CCTTGGCATT CACGCGGCCG
CAGGACAAGA CCAACATCGC GGTGCTCAGT CCGGCACCGC AGATGGCTGC TCAGAACGAG
AGCCAGCCGC AGGATCGACA GGTGAAGAAG AGTGCCTAG
|
|---|
| Protein sequence | MTVSTIIRDC LDTLLHPSAR YDALISARHR AFIAPRLFGS LAALAAFPVY LAIHGAPAGL
EVAAFAWLIA PILLSYFLSR TGRYESANIL SALAMAGLIM AVAINTGGIE SFAAIWLVVI
PLEAALSASR RVVAFASALA LGCAAALIAL NHFEALPVSQ ASASHGTMMA IGIASALLYA
CGLAYGTESL ARTSVALLYD EEDRYRLLAR NMSDVISRHA RNGAVLFVSP AAEPLLGVPV
SRLLGHGLFD RVHVADRPAF LTALSDAGRG GEARSVEFRI RRDVPRGDRG RCNTADFIWL
EMRCRPLEPS AKNATSEAEV VAVMRDVTDR KEQEQALELA RAAAERADAS RSHFLATMSH
ELRTPLNAII GFSEMIVQED VLMISAARRK EYAQLINDSG QHLLSVVNGI LDMSKMESGK
FEILPEPFAP RPALLNCCNL LALKARENEV DLVTRAPENL PQLTGDPRAF KQIVLNLVSN
AIKFTERGGT VTVSAAVEGA RLALRVSDTG VGIGADDLKR IGEAFFQASK SYHRRHEGTG
LGLSIVKSLV ALHGGEMSVE SKLDEGTTVT VMLPLAFTRP QDKTNIAVLS PAPQMAAQNE
SQPQDRQVKK SA
|
|---|
| |