| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1577 |
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| Symbol | |
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| ID | 3972925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1716464 |
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| End bp | 1717696 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637924693 |
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| Product | RNA methyltransferase TrmH, group 1 |
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| Protein accession | YP_531458 |
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| Protein GI | 90423088 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[S] Function unknown |
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| COG ID | [COG0565] rRNA methylase
[COG2852] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.68355 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0119734 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCT CCGGAACCGA CAAGAGCAAA GCCAAAGCCG ATCTGACCGG GCCGGTGGTG
ATTCTGGTCG AGCCGCAGCT CGGCGAGAAC ATCGGCATGT GCGCCCGGGC GATGGGCAAT
TTCGGGCTGA CCAGGCTGCG CATCGTCAAG CCGCGCGACG GCTGGCCCAA CGTCCATGCC
AGGCGCGCGG CGTCGGGCGC CGATTACATC CTCGACGCAG TGGAATTGTT CGAAACCGTG
GAGCAGGCGG TCGCCGGCTG CTCGCTGTTG TTCGCCACCA CCGCGCGCGC CCACGATCAG
GCCAAGCCGG TGCGCGCGCC GGAGGAAGCG GCGCGGGAGA TTTTTGCTGA GGTCGGGCAG
GGCGGCGAGG TCGGCATCAT GTTCGGCCGC GAACGTTATG GGCTGGAGAA CGACGAGGTG
GCGCTGGCCA ACCGCATCGT CACCTTTCCG GTCAATCCGG GCTTCGCCTC GCTCAATCTG
GCGCAGGCCG TGCTGCTGAT GGGCTACGAA TGGTTCAAGC TCGCCACCGC AAACGCGCTG
CCGTTCGCGA TGCCGGAGCG AAGCGAGCGC GCATCGCAGC ACCAGATGCA GGCGTTCTTC
GACAATCTGG TCGGCGAGCT CGACAAGGTG GAGTTTTTGC GCCCGGCCGA GAAGCGCGAC
ACCATGCTGG TCAACCTGCG CAACATCTTC ACCCGGATGG AGCCGACCAA GCAGGACATG
CACACGCTGC ACGGCGTGGT GATGGCGATC GCCGAGGGCC GCAAGGGCCC GGCCAAGGGC
GGCGTGCTCG ACGGCGAACA GGCCACAAGG CTGCGCGCGC TGCTGGCCGA ACACGGCCAG
GGCGCGCTGC CGCATGAAAG CGGCACCGTG CGCGGGCTGG CGCGGCTATT ACGCCGCAAC
CCCACCGACG CCGAACGGAT CATGTGGCAG GCGCTGCGCA CCGACCGCCG CTTCGCCGGG
CAGTTCAAGC GGCAGACCCC GGTCGGCCGC CACATCCCGG ATTTCGTCTC CTTCGCCCAA
CGCATCGCCA TCGAGCTGAT CAATCCCGAC GAGACCGACG TGATCCGCAC CGACCGCGCC
TCGCGCCAAA CCTGGCTCGA GGAACGCGGC TACCGCGTGG TGGCGATCGT CGCCGATGAG
GTGACGGGCG ACGTGGGTGT GCCGCTCGTG GCGCTGGAGC AGGCGATGGC GGGCGCGCAG
GGGGCGAGTG GCGAGGGGGT AAGTCGCGAG TAG
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| Protein sequence | MSGSGTDKSK AKADLTGPVV ILVEPQLGEN IGMCARAMGN FGLTRLRIVK PRDGWPNVHA
RRAASGADYI LDAVELFETV EQAVAGCSLL FATTARAHDQ AKPVRAPEEA AREIFAEVGQ
GGEVGIMFGR ERYGLENDEV ALANRIVTFP VNPGFASLNL AQAVLLMGYE WFKLATANAL
PFAMPERSER ASQHQMQAFF DNLVGELDKV EFLRPAEKRD TMLVNLRNIF TRMEPTKQDM
HTLHGVVMAI AEGRKGPAKG GVLDGEQATR LRALLAEHGQ GALPHESGTV RGLARLLRRN
PTDAERIMWQ ALRTDRRFAG QFKRQTPVGR HIPDFVSFAQ RIAIELINPD ETDVIRTDRA
SRQTWLEERG YRVVAIVADE VTGDVGVPLV ALEQAMAGAQ GASGEGVSRE
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