Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1571 |
Symbol | alaS |
ID | 3973129 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 1704258 |
End bp | 1706930 |
Gene Length | 2673 bp |
Protein Length | 890 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637924687 |
Product | alanyl-tRNA synthetase |
Protein accession | YP_531452 |
Protein GI | 90423082 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.673823 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000202808 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCGGCG TAAACGAAAT CAGATCGGCA TTTCTGAATT ATTTCGGCAA GGATGGGCAC GAGATCGTGC CGTCGTCCCC GTTGGTGCCG CGCAACGATC CGACCTTGAT GTTCACCAAT GCCGGCATGG TGCAGTTCAA GAACGTCTTC ACCGGGGTGG AGAAGCGCGC CAACCACCGC GCCACCACCT CGCAGAAATG CGTCCGCGCC GGCGGCAAGC ACAACGACCT CGACAATGTC GGCTACACCG CGCGGCATCA CACCTTCTTC GAGATGTTGG GTAATTTTTC GTTCGGCGAT TACTTCAAAG ACCACGCCAT CGAACTCGCC TGGAACCTGA TCACCAAGGA ATTCGGCCTG CCCAAGGAGC GGCTGCTGGT CACGGTGTTC TCCGAGGACG ACGAGGCGTT CGCGCTGTGG AAGAAGATCG CCGGCTTGCC GGACTCCAAG ATCATCCGGA TCCCGACCTC GGACAATTTC TGGCAGATGG GCGACACCGG CCCCTGCGGG CCGTGTTCGG AAATCTTCTT TGACCACGGC GATCACATTC CTGGCGGCCC GCCCGGCTCG CCCGAAGAAG ACGGCGACCG CTTCATCGAG ATCTGGAATC TGGTGTTCAT GCAGTTCGAC CAGATCGCGC CGGGGCAACG CAACCCGCTG CCGAAGCCGT CGATCGACAC CGGGATGGGC TTGGAGCGCA TCGCCGCGGT GCTGCAGGGC AAGCACGACA ATTACGACAT CGATCTGTTC CAGGCGCTGA TCCGCGCCAT CGCCGAACTG ACCGGCGCCG ATCCGAAGGG CGAGCACAAG GCCTCGCTGC GGGTGATCGC CGATCACTTG CGCGCCTCGT CGTTCCTGAT CGCCGACGGC GTGCTGCCGT CGAACGAAGG CCGCGGCTAC GTGCTGCGCC GGATCATGCG GCGCGCGATG CGCCACGGCC AATTGCTCGG TGCCACCGAG CCGCTGATGT GGCGCCTGGT GTGGGCCTTG GTGCGCGAGA TGGGGCAGGC CTATCCGGAG CTGGTGCGCG CCGAGCCGAT GATCGAGGAG ACGCTGCGGC TGGAAGAAAC CCGGTTTCGC AAGACGCTGG ATCGCGGCCT GATCATTCTC GACGAGAAGA GCAGCACGCT GAAGAAAGGC GACATGTTCG ACGGCGAGAC CGCGTTCACG CTGTACGACA CCTATGGCTT TCCGCTGGAT CTCACCCAGG ACGCGCTGCG CAACCGCGGC ATCAGCGTCG ACATCGCCTC GTTCACCGAT GCGATGGACC GCCAGCGCGC CAAGGCGCGG GCGTCGTGGG CGGGGTCGGG CGACACCGCT ACCGAAACCG TGTGGTTCGG CCTGCGCGAA CAGCTCGGCG CCACTGAATT CCTCGGCTAC GAGACCGAGA CCGCCGAAGG CGTGGTCGCG GCCTTGGTGA AGGACGGCCA AAAGGTCGAT CAGCTCAAGG TCGGCGAGGC CGGCGCGATC GTGCTCAACC AAACCCCGTT CTACGCCGAA TCCGGCGGCC AGGTCGGCGA CACCGGGGTG ATGACCGGCG AGGGCGTGCG GTTCCGCGTC ACCGAGACCC AGAAGAAGGC GCACGATCTG TTCGTGCATC TCGGCACCGT GGAGCAGGGC ACGCTGACGC CTGACACCGC GCTGTTGCTC GAGGTCGATC ACACCCGCCG CTCCTCGATC CGCGCCAATC ACTCCGCCAC CCATTTGTTG CACGAGGCGC TGCGCCAGGT GCTCGGCGAT CACATCGCGC AGAAGGGCTC GCTGGTGGCC GAGGATCGAC TGCGGTTCGA TTTCGTGCAT CAGAAGCCGA TCAGCGCCGA CGAATTGCGC CGGGTCGAGG ACATCGCCAA CGAGGTGGTG CTGGAGAACG ACGAAGTCAC CACACGGCTG ATGGCGGTTG ACGACGCCCG CGAGGCCGGC GCGCGTGCGC TGTTCGGCGA GAAATACGGC GACGAAGTCC GTGTCGTGAC CATGGGCAAG TCGGCGCGCC AGCACGGCAG CAACGCGCTC GGCTGGTCGG TGGAATTGTG CGGCGGCACC CATGTGCGGC GCACCGGCGA TATCGGGCTG ATCTCGATCA CCGGCGAAAG CGCGGTGGCC TCCGGGGTGC GCCGGATCGA GGCGTTGACC GGCCGCTTCG CGCGGCAGAG CGCCAACGCG GCGATCGACA CCGCGAAAGC CACCGCCGCC GAACTGCGCA CCTCGGTCGA CGACATGCCG GCGCGGGTCG CGGCCCTGAT GGACGAGCGC AAGAAGCTCG AGCGCGAATT GGCCGAGGCC CGGAAGAAGC TGGCGATGGG CGGCGGTGGT GCTGCGGCCG CCAATGGCGA GGCCGGCGTC CGCGAGGTCG GCGGCGTCAA GCTGTTGGCG CGCGCGGTCG AGGGCATCGA GATCAAGGAC CTGAAGAGCC TGGTCGATCA GGGCAAGAAG CAGCTCGGCT CCGGCGTGAT CGCGCTGGTC GCCACCAGCG CCGACGGCAA GGGCTCGATC GTGGTCGGCG TCACGCCGGA TCTGGTCGCC CGGTTCTCTG CGGTCGATCT GGTACGCAAG GCCTCGGAAG TGCTGGGCGG CAAGGGCGGC GGCGGCAAGC CCGATATGGC GCAGGCCGGC GGCCCGGACG GCTCCAAGGC GCAGGCCGCG CTCGACGCCA TTGCCGAAGC GATCGGCGGA TAA
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Protein sequence | MSGVNEIRSA FLNYFGKDGH EIVPSSPLVP RNDPTLMFTN AGMVQFKNVF TGVEKRANHR ATTSQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKDHAIELA WNLITKEFGL PKERLLVTVF SEDDEAFALW KKIAGLPDSK IIRIPTSDNF WQMGDTGPCG PCSEIFFDHG DHIPGGPPGS PEEDGDRFIE IWNLVFMQFD QIAPGQRNPL PKPSIDTGMG LERIAAVLQG KHDNYDIDLF QALIRAIAEL TGADPKGEHK ASLRVIADHL RASSFLIADG VLPSNEGRGY VLRRIMRRAM RHGQLLGATE PLMWRLVWAL VREMGQAYPE LVRAEPMIEE TLRLEETRFR KTLDRGLIIL DEKSSTLKKG DMFDGETAFT LYDTYGFPLD LTQDALRNRG ISVDIASFTD AMDRQRAKAR ASWAGSGDTA TETVWFGLRE QLGATEFLGY ETETAEGVVA ALVKDGQKVD QLKVGEAGAI VLNQTPFYAE SGGQVGDTGV MTGEGVRFRV TETQKKAHDL FVHLGTVEQG TLTPDTALLL EVDHTRRSSI RANHSATHLL HEALRQVLGD HIAQKGSLVA EDRLRFDFVH QKPISADELR RVEDIANEVV LENDEVTTRL MAVDDAREAG ARALFGEKYG DEVRVVTMGK SARQHGSNAL GWSVELCGGT HVRRTGDIGL ISITGESAVA SGVRRIEALT GRFARQSANA AIDTAKATAA ELRTSVDDMP ARVAALMDER KKLERELAEA RKKLAMGGGG AAAANGEAGV REVGGVKLLA RAVEGIEIKD LKSLVDQGKK QLGSGVIALV ATSADGKGSI VVGVTPDLVA RFSAVDLVRK ASEVLGGKGG GGKPDMAQAG GPDGSKAQAA LDAIAEAIGG
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