| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1570 |
|---|
| Symbol | gcvT |
|---|
| ID | 3973126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 1702672 |
|---|
| End bp | 1703826 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637924686 |
|---|
| Product | glycine cleavage system aminomethyltransferase T |
|---|
| Protein accession | YP_531451 |
|---|
| Protein GI | 90423081 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase) |
|---|
| TIGRFAM ID | [TIGR00528] glycine cleavage system T protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000466042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTGG CACAGAACGA TCAAACGGCC CCCCTGCAGC GGACCCCGCT GCACGCGCTG
CACCTGTCGC TTGGCGGCAA GATGGTACCG TTTGCGGGCT ACGAGATGCC GGTGCAATAC
CCCACCGGCG TGCTCAAGGA GCATCTCCAT ACCCGCGCCA AGGCCGGGCT GTTCGACGTC
TCGCACATGG GACAGCTCGA ACTGCGGGCC AAATCCGGCC ATGTCGCCGA TGCCGCGCGG
GCGCTGGAAC GGCTGGTGCC GCAGGATATT CTGGCGATCG CACCGGGGCG GCAGCGCTAC
GCCCAGTTCA CCAATGAGCA AGGCGGCATT CTCGACGACC TGATGGTGGC GAATTCCGGC
CGCCATCTGT TTCTGGTGGT GAACGCCGCC TGCAAGGCCG CCGACGAGGC GCATCTGCGC
GATGGGCTGT CCGACGTCTG CGACATCGTC TCCCGGCCCG ACCGGGCGCT GCTGGCGCTG
CAAGGCCCTC ACGCCGAAGC CGCGCTCAGC AGGCTCTGTA GCCAGGTCGA CACGTTGCGC
TTCATGGACA CCGCCCCGCT CACCGTGATG GGGTTGGACT GCTTGGTGTC GCGCTCCGGC
TACACCGGCG AGGACGGCTA TGAGATCTCG GTGCCGGCCG ACGGCGCCGT GGCGCTGGCC
GAAGCGCTGC TCGACGATCC CGAGGTGCTG CCGATCGGAC TTGGCGCCCG CGACAGCCTG
CGGCTCGAGG CCGGGCTCTG CCTTTACGGT CACGACATCG ACGCCAGCAC CACGCCGGTC
GAAGCGGCGC TGGAGTGGTC AATCCAAAAA AGCCGCCGCA ACGGCGGCCC GCGGCCGGGC
GGTTTTGCCG GCGCCGCGGT GATTTTGGAC CAATTGGAAA CCGGCGCGCC GCGCCGCCGC
GTCGGACTGC GGCCGGACGG CCGCGCCCCG GTGCGCGAGG GCGCGCCGCT GTTCGGCGAC
GACAGCGCCA CCGATTCGAT CGGCACGATC AGCTCGGGCG GGTTCGGGCC GAGCCTCGGC
GGCCCGTTGG CGATGGGTTA TCTGCCGACG CCACAGGCTC GTCACGATGC CGTGATCTTT
GCCGAACTGC GTGGCCAGCG GCTGCCGCTG CGGGTCTGCG CCACCCCTTT CATTCCGACC
AGCTACAAGC GTTAA
|
|---|
| Protein sequence | MMLAQNDQTA PLQRTPLHAL HLSLGGKMVP FAGYEMPVQY PTGVLKEHLH TRAKAGLFDV
SHMGQLELRA KSGHVADAAR ALERLVPQDI LAIAPGRQRY AQFTNEQGGI LDDLMVANSG
RHLFLVVNAA CKAADEAHLR DGLSDVCDIV SRPDRALLAL QGPHAEAALS RLCSQVDTLR
FMDTAPLTVM GLDCLVSRSG YTGEDGYEIS VPADGAVALA EALLDDPEVL PIGLGARDSL
RLEAGLCLYG HDIDASTTPV EAALEWSIQK SRRNGGPRPG GFAGAAVILD QLETGAPRRR
VGLRPDGRAP VREGAPLFGD DSATDSIGTI SSGGFGPSLG GPLAMGYLPT PQARHDAVIF
AELRGQRLPL RVCATPFIPT SYKR
|
|---|
| |