| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1568 |
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| Symbol | |
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| ID | 3973124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1699407 |
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| End bp | 1702280 |
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| Gene Length | 2874 bp |
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| Protein Length | 957 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637924684 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_531449 |
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| Protein GI | 90423079 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.34808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000847802 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCGCCC ACCGCCAGTC CGAGGACATC GCCACCGGTT TCGCCCGCCG CCACATCGGG
CCGTCGCCGC AGGACATCCG CGGCATGCTG CGCGTGGTGG GGGCCGAGAG TCTGGAGGCT
TTGGTCGACC AGACGCTGCC GGCGGCGATC CGGCAGCGCG CGCCGCTCGA CCTCGGCCAG
CCTCTGACCG AGACCGAGGC GCTGGCGCAT ATGGCCGAGT TGGCCTGCCG CAACGAGGTG
TTCACCTCGC TGATCGGCCA AGGCTATTCC GGCACCATCC TGCCGGCGGT GATCCAGCGC
AACATTCTGG AGAATCCGGC CTGGTACACC GCCTATACGC CGTATCAGCC GGAGATCAGC
CAGGGCCGGC TGGAAGCCTT GTTCAACTAC CAGACCATGA TCTGCGATCT CACCGGGCTC
GACGTCGCCA ACGCCTCGCT GCTCGACGAG GCCACTGCCG CTGCGGAAGC GATGGCCTTG
GCGGAGCGCA GCGCGCACAA GAAAACCAAG GCGTTCTTCG TCGACCGCGA AGTGCATCCG
CAGACGCTTG AAGTGCTACG CACCCGCGCC GAGCCGCTCG GCTGGACGCT GATCGTCGGC
GACCCGGTGC ACGATCTGCA GAAGGCCGAC GTGTTCGGCG CGCTGATCCA ATATCCCGGC
ACGTCCGGCG CGGTGCGCGA TCCGCGGCCG ATGATCGCCG CATTGCGCGC CAAGGGCGGG
CTCGCCATCA TCGCCGCCGA CCTGTTGGCG CTGACGCTGT TGGCCTCGCC GGGCGATCTC
GGCGCCGACA TCGCGATCGG TTCGGCGCAG CGCTTCGGCG TGCCGATGGG CTACGGCGGG
CCGCACGCCG CCTTCATGGC GGTGCGCGAC AGCTTGAAAC GCGCGCTGCC CGGCCGCCTG
GTCGGGCAGT CGATCGACGT GCACGGCCAG CCGGCCTATC GGCTGGCGCT GCAGACCCGC
GAGCAGCACA TCCGCCGCGA GAAGGCCACC TCCAACATCT GCACCGCGCA GGTGCTGCTG
GCGGTGATCG CCGCGATGTA TGCGGTGTAT CACGGCCCCG ACGGGCTCTC CGAAATCGCC
CGCCGCGTGC ACCGGCGCGC CGCGGTGTTG GCCGCAGGCT TACGCAAGCT CGGCTTGCCG
CCGCACAATG AATCGTTCTT CGACACGCTG ACCGTGGAGG TCGGCGCCCG GCAGAGCGAG
ATCGTGGCGC GCGCGCTGAA TGAACGGATC AATCTGCGGA TCGGCGACGG CACGCTCGGC
ATCGCGCTCG ACGAGACCAC CACGCCGGCC GTTGTGGAAG CGGTGTGGCG GGCGTTCGGC
GGCACGCTGA ACTATCGCGA GGTCGAGCCG GAAATGCGCG ACACGCTGCA TCCGGCGTTG
AAGCGCACTT CGAGTTTCAT GACCCAGGAC GTATTCCAGG CCTATCGCTC GGAGACCGAG
CTGCTGCGCT ACATGCGCAA ATTGAGCGAC CGCGACCTCG CGCTCGACCG CGCCATGATC
CCGCTCGGCT CCTGCACCAT GAAGCTGAAC GCCACCACCG AGATGATGCC GCTGACCTGG
CCGGCGTTCG CCAGCCTGCA CCCGTTCGCG CCGCGCCAGC AGGCCGCGGG CTATCACGCG
CTGTTCGCCA AGCTGGAAGC CTGGCTCGCC GACATCACCG GCTACGACGC GGTGTCGCTG
CAGCCGAATT CCGGCGCGCA GGGCGAATAT GCCGGGATGC TGGCGATCCG GCACTATCAC
GCCGCGCGCG GCGAATCGCA TCGCAAGGTC TGCCTGATCC CGTCCTCGGC GCACGGCACC
AACCCGGCCT CCGCCAGCAT GGCGGGCATG GACGTGGTGG TGGTCGCCTG CAACAATCGC
GGCGACGTCG ACGTCGAGGA TCTGCGCGCC AAGGCCGCCG AGCACAGCGC CGACCTCGCC
GCGGTGATGA TCACCTATCC GTCGACCCAC GGCGTGTTCG AAGAGCACAT CCGCGAGATC
TGCGACATCG TCCACGGCCA TGGCGGCCAG GTCTATCTCG ACGGCGCCAA TCTCAACGCC
CAGGTCGGGC TGGCGCAGCC CGGCAAATAC GGCGCCGACG TCAGCCATCT CAACCTGCAC
AAGACGTTCT GCATTCCGCA TGGCGGCGGC GGCCCCGGCA TGGGACCGAT CGGGGTGCGG
GCGCATCTGG CGCCGTACCT GCCCGGGCAT CTGGTGCTCG ACGGCACCGA CGAGGCGCGC
TCCGGCGGCG CGGTGGCGGC GGCGCCGTTC GGCTCGGCGT CGATCCTGAC CATCTCCTAC
ATCTACATCC TGATGATGGG CGGCGAAGGA CTGCGCCGCG CCACCGAAGT CGCGATCCTC
AACGCCAACT ACATCGCGGC AAAGCTCGAT CCGCATTTTC CGGTGCTGTA TCGCAACGAG
CGCGGCCGCG TCGCGCATGA ATGCATCGTC GATCCGCGCG CGCTGAAGAA CTCCAGCGGC
GTCACCGTCG ACGACATCGC CAAGCGGCTG ATCGACTACG GCTTCCACGC GCCGACCATG
AGCTTCCCGG TGCCGGGCAC GCTGATGATC GAGCCGACCG AATCGGAATC CAAGGCCGAG
ATCGACCGTT TCTGCGACGC CATGATCGCG ATCCGGCGCG AGATCGCCGA GATCGAGGCC
GGGCGCTGGA GCGTGGAAAC CTCGCCGCTG CGCCACGCCC CGCACACCGT GCACGACATC
GCCGAAGAGG TCTGGAAGCG GCCCTATACC AGGCACGAGG GCTGCTTCCC CGCCGGCACC
ACCCGCACCG ACAAATACTG GTGCCCGGTC GGCCGCATCG ACAACGTCTA TGGCGACCGC
AATCTGGTGT GCTCCTGCCC GCCGATCGAG GACTACGCGC TGGCGGCGGA GTGA
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| Protein sequence | MTAHRQSEDI ATGFARRHIG PSPQDIRGML RVVGAESLEA LVDQTLPAAI RQRAPLDLGQ
PLTETEALAH MAELACRNEV FTSLIGQGYS GTILPAVIQR NILENPAWYT AYTPYQPEIS
QGRLEALFNY QTMICDLTGL DVANASLLDE ATAAAEAMAL AERSAHKKTK AFFVDREVHP
QTLEVLRTRA EPLGWTLIVG DPVHDLQKAD VFGALIQYPG TSGAVRDPRP MIAALRAKGG
LAIIAADLLA LTLLASPGDL GADIAIGSAQ RFGVPMGYGG PHAAFMAVRD SLKRALPGRL
VGQSIDVHGQ PAYRLALQTR EQHIRREKAT SNICTAQVLL AVIAAMYAVY HGPDGLSEIA
RRVHRRAAVL AAGLRKLGLP PHNESFFDTL TVEVGARQSE IVARALNERI NLRIGDGTLG
IALDETTTPA VVEAVWRAFG GTLNYREVEP EMRDTLHPAL KRTSSFMTQD VFQAYRSETE
LLRYMRKLSD RDLALDRAMI PLGSCTMKLN ATTEMMPLTW PAFASLHPFA PRQQAAGYHA
LFAKLEAWLA DITGYDAVSL QPNSGAQGEY AGMLAIRHYH AARGESHRKV CLIPSSAHGT
NPASASMAGM DVVVVACNNR GDVDVEDLRA KAAEHSADLA AVMITYPSTH GVFEEHIREI
CDIVHGHGGQ VYLDGANLNA QVGLAQPGKY GADVSHLNLH KTFCIPHGGG GPGMGPIGVR
AHLAPYLPGH LVLDGTDEAR SGGAVAAAPF GSASILTISY IYILMMGGEG LRRATEVAIL
NANYIAAKLD PHFPVLYRNE RGRVAHECIV DPRALKNSSG VTVDDIAKRL IDYGFHAPTM
SFPVPGTLMI EPTESESKAE IDRFCDAMIA IRREIAEIEA GRWSVETSPL RHAPHTVHDI
AEEVWKRPYT RHEGCFPAGT TRTDKYWCPV GRIDNVYGDR NLVCSCPPIE DYALAAE
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