Gene RPC_1533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1533 
Symbol 
ID3971969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand+ 
Start bp1668972 
End bp1670627 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content64% 
IMG OID637924648 
Producttartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit 
Protein accessionYP_531414 
Protein GI90423044 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.639003 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCCC CCACGCCGAT CCCGTCCGCC GCCACCCCGG TTCCGCCGTA CAAGCACACC 
CCGTTGTTCC CGCTCGGCAA AGACGAGACG CCGTACCGCA AGATCACCTC TGAGGGCGTC 
CGGGTCGAGA CCGTGCTCGG GCGTGCCATG CTGGTGGTGG AGCGCGAGGC GCTGCGGGCG 
CTGTCGGAGG CCGCGTTCGG CGACATCAAC CATTATCTGC GGCCGCAGCA TCTGCAGCAG 
CTGCGCAACA TCCTCGACGA CAACGACGCC AGCCCGAACG ACAAGTTCGT GGCATTGGAC 
TTCTTGAAGA ACGCCAATAT CGCCGCCGGC GGCGTGCTGC CGATGTGCCA GGACACCGGC 
ACCGCGATCA TCATGGGCAA GAAGGGCTTC AACGTCATCA CCGACGGCAG CGACGAGGCG 
GCTTTGAGCG AAGGCGCGCG CGACGCCTAT CTGCGCCGCA ATCTGCGCTA TTCGCAGGTG 
GCGCCTTTGT CGATGTATGA AGAGAAGAAC ACCGCCAACA ACATGCCGGC GCAGTGCGAG 
ATCTATGCCG AGGGCGATGA CGCCTACAAA TTCATGTTCA TGGCCAAGGG CGGTGGCTCG 
GCCAATAAGA GCTTCCTGTT CCAGGCGACG CCGTCGGTGC TGACCAAGGA TCGGCTGCTG 
GCGTTCCTGA AAGAGAAGGT GCTGACGCTC GGCACCGCGG CGTGCCCGCC CTATCATCTG 
GCGATCGTGA TCGGCGGCAC TTCGGCCGAA CTGTGCATGA AGACGGTGAA GCTGGCGTCG 
GCGAAATATC TCGATGCGCT GCCGACCCAT GGCTCCGAGA ACGGCAACGG GTTTCGCGAC 
CTGGAGATGG AGCAAGAGAT CCTGAAGATG ACGCAGTCGC TCGGGGTCGG CGCGCAGTTC 
GGCGGCAAGT ATTTCTGCCA CGACGTCCGG GTGATCCGGC TGCCGCGCCA CGGCGCCTCG 
CTGCCGATCG GGCTTGGCGT GTCGTGCTCG GCGGATCGCC AGGTGCTCGG CAAGATCACC 
AAGGACGGTG TGTATCTTGA AGAACTCGAG CACAACCCGG CGCGCTTCCT GCCCGAAGTC 
GAGCAGGCGC TCGGCGGCGA GGTGGTGCAG ATCGACCTCA ACCAGCCGAT GCAAGAGATT 
CTCGCGACCT TGAGCAAATA TCCGACCAAG ACCCGGCTGT CGCTCTCCGG CACCATGATC 
GTCGCGCGGG ATTCCGCGCA CGCCAAGCTG CGCGAGCGGC TGGACAACGG CGAGCCGCTG 
CCGGACTACT TCAAGAACCA TCCGGTGTAT TACGCCGGCC CGGCGAAAAC GCCCGAGGGC 
TACGCCTCCG GCGCGTTCGG CCCGACCACC GCGGGACGGA TGGACTCCTT CGTCGATCAG 
TTCCAGGCGG CCGGCGGCTC GATGGTGATG GTGGCGAAGG GCAATCGCGC GGTGGCGGTG 
CGCGAGGCCT GCAAGAAGCA CGGCGGGTTC TATCTCGGCT CGATCGGCGG CGCCGCGGCG 
AACTTGGCCG AGCACTGCAT CAAGAAGGTC GAGCTGGTGG AATATCCCGA GCTTGGCATG 
GAGGCGATCT GGCGGATCGA GGTGCAGGAC TTCCCCGCCT TCATCATCAT CGACGACAAG 
GGCAACGACT TCTTCAAGGA GTTAAATCTG GGCTGA
 
Protein sequence
MNAPTPIPSA ATPVPPYKHT PLFPLGKDET PYRKITSEGV RVETVLGRAM LVVEREALRA 
LSEAAFGDIN HYLRPQHLQQ LRNILDDNDA SPNDKFVALD FLKNANIAAG GVLPMCQDTG 
TAIIMGKKGF NVITDGSDEA ALSEGARDAY LRRNLRYSQV APLSMYEEKN TANNMPAQCE 
IYAEGDDAYK FMFMAKGGGS ANKSFLFQAT PSVLTKDRLL AFLKEKVLTL GTAACPPYHL 
AIVIGGTSAE LCMKTVKLAS AKYLDALPTH GSENGNGFRD LEMEQEILKM TQSLGVGAQF 
GGKYFCHDVR VIRLPRHGAS LPIGLGVSCS ADRQVLGKIT KDGVYLEELE HNPARFLPEV 
EQALGGEVVQ IDLNQPMQEI LATLSKYPTK TRLSLSGTMI VARDSAHAKL RERLDNGEPL 
PDYFKNHPVY YAGPAKTPEG YASGAFGPTT AGRMDSFVDQ FQAAGGSMVM VAKGNRAVAV 
REACKKHGGF YLGSIGGAAA NLAEHCIKKV ELVEYPELGM EAIWRIEVQD FPAFIIIDDK 
GNDFFKELNL G