| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1309 |
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| Symbol | |
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| ID | 3972511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1422479 |
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| End bp | 1424647 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637924419 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_531190 |
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| Protein GI | 90422820 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.543635 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGTTCATG CCCACGCGCC CACTGCATTC GGAAAGGCTG ACCTTTCGAA TTGCGAGCGG
GAGGAAATTC ATCTCGCGGG CTCGATTCAG CCGCACGGCG CGTTGCTGGT GGTCAGCGAG
CCTGACCACT GCGTCATTCA GGCCAGCGCC AATGCTGCCG AGTTCCTGAA CCTCAAGCAG
GTTCTCGGAA TGCCGTTGGC CGACCTCGAC GGCGACCTTC TCATTCAAAT CCTTCCACAT
CTCGATCCCA CCGCCGAAGG CATGCCGATT GCGGTGCGCT GCCGTCTCGG CAATCCGGCG
CTGGAGTTCG ATTGTCTGTT GCACCGGCCG CCCGAAGGCG GATTGATCGT CGAACTCGAA
CGCGCCGGCT CCTCGCTCGA TCTGTTGGAA CAGATCGCGA CGGCACTCGA GGCGATTCGT
TCGACCACCT CGCTCAGCGG GCTGTGTGAT CAGGCCGCCG CTTTGTATCG CGATCGCACC
GGCTACGACC GGGTGATGGT TTACCGATTT GATGATGAAG GCCACGGCGA GGTGTTCTCG
GAGCGCTGCC GATCGGATCT CGAGGCCTAT CTCGGCAACC GTTATCCGGC CTCCGATATT
CCGCAGATGG CGCGCCGACT TTACGAGCAG ACCCGGGTTC GGGTGCTGGT CGACGTCAAT
TACCAACCCG TTCCCTTGCA GCCGAGGTTG TCGCCACTGA CCGGGCGCGA ACTCGACATG
TCGCGGTGTT TTCTCCGCAG CATGTCGCCG ATCCACTTGC AGTATCTGAA GAACATGGGC
GTCCGCGCGA CGCTGGTGGT CTCGCTGATG GTCGGCGGAA AGCTGTGGGG CCTGATCGCC
TGCCATCACT ACGAGCCCCG TTTCATCCAT TTCGAAATGC GGGCGGTGTG CGAGTTGCTT
GCCGAGGCGA TCGCGACGCG CATCGTCGCG CTCGAAAGTT TTGCGCAGAG CCAGTCGGAG
ATTTTCGTTC AGCGGCTCGA GCAACGGATG ATCGAAGCGA TCTCACGCGA GGGCGATTGG
CGCGCCGGGG TTTTCGACAC GTCGCAGTCG ATCCTGCAAC CGCTTGGCGC CAGCGGCAGT
GCGCTGATCT ATGAGGGGCA GGTCACGACC GCCGGCGAGG TGCCGGGCAC TCAGGACATT
CGCGAGCTCG GCGCTTGGCT GGATCGCCAA CCTCGCACCG CGGTGATCTA CACCGCGGCG
CTCGGAATCG AGGTTCCGGA GTTCGCCGGC CTGACCAAGG TGGCAAGCGG CATCGCCGCC
ATCCCGGTTT CCAGCAATCC CGGCGAATAT CTGATCTGGT TCCGGCCGGA ACGCGTTCGC
ACCGTGACCT GGGGCGGCGA CCCGCTGAAG CCGTTCGTGA TCGGCGACAA TCCGTCGGAT
TTGTCGCCGC GACGCTCCTT TGCGCAGTGG CATCAGCTGG TGGAGGGAAC GTCGGAGCCA
TGGGGCCCCG GCGACGTCGC AGCCGCGCGT GCGATCGGCG CGACGGTGGC CGATATCGTG
CTGCAATTCC GTGCGGTACG CACCCTGATC GCGCAAGATC AGTTGGAGAA ATACAGCAGG
CAAGTCGGCA TCTCGGATCA GCCGGTGATC ATCGCCGACA TCGAAGGCAA GATCCTGCTG
ATCAACGATG CGTTTCGTTC GTTGCTGCCG AAGGATCACG TGCCCTCGCA GCGGCTGGAC
AATCTGGCGG GCGCCTTCTG CAATCCCGAG GATTTTCTAC TCCGCGTCCA CGACCTCATC
ACCCATCACC GCTCTTGGCG CGGCGAGATG CTGTTGCGCG GAGTAGGCAA CGAAGCAAAG
CCGCTGCTGG TGCGGGCTGA TCCGGTTTTT CCCTCGAAGG ACCGCGTGCT GGGGTTCGTG
TTGATCTTCG TGGATGTGAC GGATCGCAAG GCCGCCGAAG CGGCGCGCAG CCGGCTGCAG
GAAGGCATCA TGAAGAGCCA TCGGGTCGGC AGCGTGCGTC TCGATACCAA GACCGACCTT
ATCTACCAGA ACCTATTGTC GTCGGTGGTC GAGAACGCCC AGCTCGCGGC GTTGGAAATT
ACCTACGGCG TCGAGACTAG CCGCATCGCC GGCATGCTCG AGAGCGTCCG CAATTCGACG
CTGCGAACCG CCGAAGTGCT GCAGCACCTG ATCTGGCATT CGTCGCGGAC CTCCGGCGAC
GACAAGTGA
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| Protein sequence | MVHAHAPTAF GKADLSNCER EEIHLAGSIQ PHGALLVVSE PDHCVIQASA NAAEFLNLKQ
VLGMPLADLD GDLLIQILPH LDPTAEGMPI AVRCRLGNPA LEFDCLLHRP PEGGLIVELE
RAGSSLDLLE QIATALEAIR STTSLSGLCD QAAALYRDRT GYDRVMVYRF DDEGHGEVFS
ERCRSDLEAY LGNRYPASDI PQMARRLYEQ TRVRVLVDVN YQPVPLQPRL SPLTGRELDM
SRCFLRSMSP IHLQYLKNMG VRATLVVSLM VGGKLWGLIA CHHYEPRFIH FEMRAVCELL
AEAIATRIVA LESFAQSQSE IFVQRLEQRM IEAISREGDW RAGVFDTSQS ILQPLGASGS
ALIYEGQVTT AGEVPGTQDI RELGAWLDRQ PRTAVIYTAA LGIEVPEFAG LTKVASGIAA
IPVSSNPGEY LIWFRPERVR TVTWGGDPLK PFVIGDNPSD LSPRRSFAQW HQLVEGTSEP
WGPGDVAAAR AIGATVADIV LQFRAVRTLI AQDQLEKYSR QVGISDQPVI IADIEGKILL
INDAFRSLLP KDHVPSQRLD NLAGAFCNPE DFLLRVHDLI THHRSWRGEM LLRGVGNEAK
PLLVRADPVF PSKDRVLGFV LIFVDVTDRK AAEAARSRLQ EGIMKSHRVG SVRLDTKTDL
IYQNLLSSVV ENAQLAALEI TYGVETSRIA GMLESVRNST LRTAEVLQHL IWHSSRTSGD
DK
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