Gene RPC_1245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1245 
Symbol 
ID3972038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1359263 
End bp1360492 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content65% 
IMG OID637924355 
Productcoenzyme F420 hydrogenase/dehydrogenase beta subunit-like 
Protein accessionYP_531126 
Protein GI90422756 
COG category[C] Energy production and conversion 
COG ID[COG1035] Coenzyme F420-reducing hydrogenase, beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.491733 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.41639e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCAGATC TGGCCGATCC AGTTCCCGCG GTGTGGACCC CGCCTCTGGC CGAGCCGGTG 
GCGCGCGAGT TGTGCACCGA TTGCGGGGTG TCGCGCACCA GCGATCCCAA GCAATGCGGC
CAGGCCTGCC AGTTCATCAA ACCGGACTAT CCGGCGATGG AATTGCGCGT CCACGGCCGG
GTGCGCGATC CCGCCAAGCC CGACGAAGCT TTCTTCGGCC CGTTCCGCCG CATGGTGCGC
GCGGCGATGA AACAGCCGCG GCAGGGCGCG CAATGGACCG GCATCACCAC AATGATCGGC
GAGCGGCTGT TGCAGACCGG CGCGGTCGAC GCGGTGCTGA CCATGGCGCA GGACCCCGAC
GACAAATGGA AGCCGATGCC GGTGATCGTC ACCAAAGCGG AGGGCATGAA GGCCTGCCGC
GGCATGCGGA TGGGCTACGC GCCACTGTTG TCGCTGCTGG AGCCGGCGCG CGACGCCGGC
CACAAGCGGA TCGCGGTGAT CGGGATTCCC TGCCAGATCT ACGCGCTGCG GCAACTCGAA
CAGAAACTCG GCTTCGAAAA GCTCTACGCG ATCGGCACGC CGTGTTCCGA CAATACCACG
ACGGAGAGCT TCCACCAGTT CCTCGATCTG CTGTCGGACA AGCCCGACAG CATCACCTAT
CTGGAATTTC GCGCCGACTA TCATGTCGAG CTGCGCTTCG ATGACGGAAG GGTGAAGGAG
ATTCCGTTCC TGCTGCTGCC GATCTCCAAG CTGCCGCCGG ATTTCTTTCC GATGACCTGC
CGCACCTGCG TCGACTACAC CAATACGCTG GCGGACATCA CCGTCGGCTA TATGGGCGGC
CAGGGCGAAC AGTGGCTGCT GATCCGCAAC GAACGCGGCG AGGAATTGCT GCGCGTGCTT
GGCGACGAGG TGAGGCTCAG CGAACCCGGC AGCGCCGGCA AGCGCACAGC CCCGGTGAAG
GGCTTCATGA AGAACGTCGA ACTCGCCGCT GGCGGCCTTC CGGTGCGCGG CATGCCGAAC
TGGCTGCGCC CGTTGATGGG CTGGCTGATG CCCAAAGTGG GTCCGCGCGG GCTGGAATTC
GCCCGCACCC GGGTCGAGAT GAAGGCGATC GAGAGCGTGC TGCATCTGCG CCGGCAATAT
CCGCAACGCA TCAAGAACAT GGTACCGGCG CACGTCTGGG CGCTGGTAAA ACCATACGGT
ATCGAGCCGC AAGACGGCGA GCGCAAGTAA
 
Protein sequence
MADLADPVPA VWTPPLAEPV ARELCTDCGV SRTSDPKQCG QACQFIKPDY PAMELRVHGR 
VRDPAKPDEA FFGPFRRMVR AAMKQPRQGA QWTGITTMIG ERLLQTGAVD AVLTMAQDPD
DKWKPMPVIV TKAEGMKACR GMRMGYAPLL SLLEPARDAG HKRIAVIGIP CQIYALRQLE
QKLGFEKLYA IGTPCSDNTT TESFHQFLDL LSDKPDSITY LEFRADYHVE LRFDDGRVKE
IPFLLLPISK LPPDFFPMTC RTCVDYTNTL ADITVGYMGG QGEQWLLIRN ERGEELLRVL
GDEVRLSEPG SAGKRTAPVK GFMKNVELAA GGLPVRGMPN WLRPLMGWLM PKVGPRGLEF
ARTRVEMKAI ESVLHLRRQY PQRIKNMVPA HVWALVKPYG IEPQDGERK