Gene RPC_1235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1235 
Symbol 
ID3969112 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1352093 
End bp1353304 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content68% 
IMG OID637924346 
ProductNnrS 
Protein accessionYP_531117 
Protein GI90422747 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3213] Uncharacterized protein involved in response to NO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00575591 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.01222e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAGCCCGA TTCCCCGCTT TCAGCCGCAC CATGGCCCGG CCATCCTGTC GAGCGGCTTT 
CGGCCGTTCT TTTTCGCCGG CGCGATCTAT GCCGCGCTCG CGGTGCTGAT CTGGCTGCCG
TTCTATTATG GCGAGTTGAC GCTTGCGACC ACGCTGGCGC CGCGCGATTG GCACGTCCAC
GAAATGCTGT ACGGTTATCT GCCGGCGGTG ATCACCGGCT TTCTGTTCAC CGCGATCCCG
AACTGGACCG GCCGGATGCC GATCCAGGGC TGGCCCCTGC TGGGCCTGGT GTTGGTCTGG
CTGGCCGGCC GCTTCGTGAT GGCGTTTTCC GCCGACATCG GCTGGCTCGC GGCGTTGCTG
ATCGACGCTG GCTTCTTGGC GCTGGTGGCG CTGGTGGTGG CGCGGGAAAT CATCACCGGC
CGCAAATGGA ACAATCTTCC GGTGGTGCTA CTGCTGACCC TGCTGCTGGC CGGCAATATC
GGCTTTCACC TCGAGGCGCA TTTCGGCGGC CTCGCCGATA TCAGCATCCG GCTCGGCATC
GCCGTGGTGA TCCTGCTGAT CGGCATGATC GGCGGCCGCA TCATTCCGAG CTTCACCCGC
AATTGGCTGG TGCGCGAGAA CCCTGGCCGC TTACCCTCGC CGTTCGGCCG CTTCGACATG
GCGGTGGTGG CCGCGAGTGC GGCGAGCCTG GTGCTCTGGG TGGCGTTCAA GGACGGCACT
CTGGTCGGCG CCGCGCTCGG CATCGCCGGG GTCTTGCATC TGGTTCGGCT CGCCCGCTGG
GCCGGCCACC GCACCACCAG GGAGCGCCTG GTTCTGGTGC TGCACGTCGG CTATTTGTTC
GTGCCGCTCG GCTTCTTGTT GACCGCCGCG GCGGCGTTCG GACTGACCGC GCCGAGCGCC
GGCGCCCACG CCTGGATGGT CGGCGCTGCC GGCATCATGA CGCTGGCGGT GATGACCCGT
GCCAGCCTCG GCCACACCGG CCAGCAACTC ACCGCGTCGC TGACCACCCA AACCATCTAC
GCGATGGCGA CGGTGGCGGT GCTGGCGCGG ATCTGCGCGG CGGTCCATCC GGCTTGGAGC
GTCGGCCTGC TGCACCTGGC GGCGTTCGCC TGGGCGGCGG CCTTCCTCGG CTTCGCGATC
AGCTTCGGTC CGCTGTTGCT AGGTCATCGC AAGCGGCAGT CGGCGGTGCC CGCAGCGCAG
CCCAGCGCCT GA
 
Protein sequence
MSPIPRFQPH HGPAILSSGF RPFFFAGAIY AALAVLIWLP FYYGELTLAT TLAPRDWHVH 
EMLYGYLPAV ITGFLFTAIP NWTGRMPIQG WPLLGLVLVW LAGRFVMAFS ADIGWLAALL
IDAGFLALVA LVVAREIITG RKWNNLPVVL LLTLLLAGNI GFHLEAHFGG LADISIRLGI
AVVILLIGMI GGRIIPSFTR NWLVRENPGR LPSPFGRFDM AVVAASAASL VLWVAFKDGT
LVGAALGIAG VLHLVRLARW AGHRTTRERL VLVLHVGYLF VPLGFLLTAA AAFGLTAPSA
GAHAWMVGAA GIMTLAVMTR ASLGHTGQQL TASLTTQTIY AMATVAVLAR ICAAVHPAWS
VGLLHLAAFA WAAAFLGFAI SFGPLLLGHR KRQSAVPAAQ PSA