Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1191 |
Symbol | |
ID | 3969146 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 1303648 |
End bp | 1305285 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637924302 |
Product | thiamine pyrophosphate enzyme-like TPP binding region |
Protein accession | YP_531073 |
Protein GI | 90422703 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.492896 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCGAC CGGCCAGCGA CATCCTGCTC GACATTCTGC GCGACGAGGG CATCACCCAC GTGTTCGGCA ATCCGGGCTC GACCGAGATG CCGCTGATGG ACGCGCTGGT CGACGCCCCC GACATCCACT ACGTGCTGGG GCTACAGGAG GCCACCGCGG TCGGCATGGC CGACGGCTGG GCGCTGACCT CGGGCAAGAC CGGCTTCGTC AATCTTCATG CGATGGGCGG GCTCGGCAAT GCGATGGGTG TGCTGGTCGC CTCCAAGGCC AGCGAGACGC CGCTGGTGGT CACCGCCGGC CAGCAGGATA CGCGACATCT GGCGACCGAG CCGTGGCTGT CCGGCGATCT GGTGGCGCTC GCCGCCCCGG TGACCAAATG GGCCAAGGAG GTGCATCGCG GCGAGGACCT CGGCGCAGCA TTGCGCCGCG CCTTTGCGAT CGCCCGCACC CCGCCCTGCG GCCCGGTGTT CCTGTCGCTG CCGATGGACG TGCTCGATCA GCCGGTCGAA GGCTCGACGC CGCCGGCCTC GGCGCCGCCG CGGCTCGGCC CCTCGCCGGA TTCCGATGGC TTTGCCGACA TGCTGGCGCG CCATGATCCA GAGAAAGTAT TCGTGCTGCT CGGCGACGAT CTGCCGGCCG GCGCGGCGCC GGGCCTGGTC GCCTTCGCGG AGGCCGGCGG CTATGCGGTG GCGGGCATGC AACTGACCTC GCGCTCGGCA TTTCCCTCGG CGCATCCGTG CTGGGCCGGC GTGCTGAAAC CGGACTTCGC GGCGATCCGC GAACGGCTGG AACGCGTCGA AGCGCTGGTG CTGGTCGGCG GCCGCGCCTT CGTCGCCTAT CCGTATCGCG ACGTCCGGCC GATTCCCGAC GGCGTGAAGA TCTTGCACGT CGCCGACAAT CCGGACGCGT TCGGCCGCGA ACACCCGGCG CACATGGCGT TGCTCGGCGA TATCGGCGCG ACGCTGCAAT CCGCAGCGGC GCGGCTCGGC GGGCTGCTCG ACCGCAACAG CGTGGTGGCG CGACTGGCGC AGCGCGATGC CACGAAGCAG GCGCAGATCG CCAAAGTCCG CGCGGAGATT CTCAGCACCG CGCATGAGAC GCCGCTGTCA CCCGACGCCG CGGTGCTCAC CGTGTCGGAC GCGCTGCCCG CCGACACGCT GCTCGCCAAT GATTCCGCGG CGACCTTCGG CCAGGTGCAG GACTTGCTGA TGACGCGGCC GGGGCGCTAC TTCTTCGCCC GCGGCGGCGT GCTCGGCTGC AACATGCCGG CCGCGGTCGG CGCCGCACTG CTGCATGACG GGCCGGTGGC ATCGTTGGTC GGCGACGGCG GCGCGATGTA TTCGCCGCAG GCGTTGTGGA GCGCGGCGCG CTATCGCGCC AAGGTGCTGT TCATCGTGTT CAACAATCGC CGCTACGGCG TGCTGCAGAA CATCGCCAAG CAGCTCGGCT GCAAGAACGC GGTCGCCGGC CGCTTCGTCG GCATGGATGT CGACGATCCG GCGATCGACT TCATGGCGCT GTCGAAATCG ATGGGCGTAC CGTCGGTGCA GGCCGACGCC CCCGACGCGA TCCGCGCCGC GATCGCCGAA GCGCTCACCC GCGACGGCCC GTCGCTGATC GAGATCGCGG TGAAGTAA
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Protein sequence | MTRPASDILL DILRDEGITH VFGNPGSTEM PLMDALVDAP DIHYVLGLQE ATAVGMADGW ALTSGKTGFV NLHAMGGLGN AMGVLVASKA SETPLVVTAG QQDTRHLATE PWLSGDLVAL AAPVTKWAKE VHRGEDLGAA LRRAFAIART PPCGPVFLSL PMDVLDQPVE GSTPPASAPP RLGPSPDSDG FADMLARHDP EKVFVLLGDD LPAGAAPGLV AFAEAGGYAV AGMQLTSRSA FPSAHPCWAG VLKPDFAAIR ERLERVEALV LVGGRAFVAY PYRDVRPIPD GVKILHVADN PDAFGREHPA HMALLGDIGA TLQSAAARLG GLLDRNSVVA RLAQRDATKQ AQIAKVRAEI LSTAHETPLS PDAAVLTVSD ALPADTLLAN DSAATFGQVQ DLLMTRPGRY FFARGGVLGC NMPAAVGAAL LHDGPVASLV GDGGAMYSPQ ALWSAARYRA KVLFIVFNNR RYGVLQNIAK QLGCKNAVAG RFVGMDVDDP AIDFMALSKS MGVPSVQADA PDAIRAAIAE ALTRDGPSLI EIAVK
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