| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0994 |
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| Symbol | |
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| ID | 3969681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1087177 |
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| End bp | 1090281 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637924111 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_530883 |
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| Protein GI | 90422513 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.112891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000169955 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGAGACGGC GTAGTCCCTC CCGAGATTTT TTCGAGGGAG GGCGCGCTTA TACGTCGTTC
CGACGTGCGC TTCGCCGTGG CAATGATCTG ATCGCGATGG CGATCTATCA TCTTCACGTC
AAGGTCATTG GCCGCAAATC CGGCTCCAGC GCGGTGGCCT CCGCCGCCTA CCGCTCGGCG
TCGCGGCTGC GCGACGACCG GCTTGAGCGT AGCTACGACT TTTCGGCCAA GCGCGGCGTC
GTCCATTCCG AGGTCATGCT GCCGGAGAAT GCGCCGCAGG CATGGCGCGA CCGCGAACGG
TTGTGGAACG ATGTCGAATC CTTCGAGGTC CGCAAGGACG CGCAGCTCGC CCGCGAGGTC
GAATTCGCCC TTCCGCGCGA GCTGACGCAG CGCCAAGGCA TCGAACTGGC CCACGACTTC
GTGCAGTCCG AATTCGTTGA CCAAGGCATG ATTGCCGACG TCAATGTGCA TTGGGACATG
GCCGAGGACG GCATGCCCAA ACCCCACGCC CATGTCATGC TGACCATGCG TGCGGTGAAC
GAAAACGGCT TCGGCCCAAA GATACGAGAC TGGAACCGCA CCGAGATGGT CGAGCGCTGG
CGGGAACGCT GGGCCGAGAT CGCCAATCAG CGGCTGGCCG AACTCGACAT CGACGCCCGG
ATCGACCATC GAAGCCTTGA AGCACAGGGC ATCGGGCTGG AGCCGCAAAG CCAGATCGGC
GCGACGGCGC AGCGGATCGA AAGCCAAGGG ATCGAGGGGC GAGGGATCGA GGCCGCCACC
AATGTCGCTG ATCGGGCCGA GATGCACCGC CAGATTGCGC GGGGCAACGG CGCAAGAATT
ATCGCCGATC CTTCCATCGC GCTGGACGCC ATCACGCAGC AGCAATCGAC CTTCACGCAG
CGCGACATGG CGAAGTTCGC GCACCGGCAC AGCGACGGCA TCGACCAGTT CAACCAGGTC
ATAGGGACGA TGCGGGGCGC GCCCGATCTG GTCGAACTGG GCAAGGACGG ACGGGGTGAG
GACCGCTTCA CCACCCGCGA CATGATCGAG ACCGAACAGC GCCTGCACCG CGCCACCGAG
CTGATGGCGG AGCGGGATCG TCATGAGGTG CAGGACGCTG ACAGGTTGGC GGCGCGGGCG
CGGGCGGAAG CGCGCGGTCT GATGCTTTCG GCGGAGCAGG CCGACGCCTT GGCGCAGGTC
ACGAACGGTC GCGATCTCGG CGTCGTGGTC GGCCATGCCG GAACGGGAAA GAGCGCGATG
CTGGGCGTGG CGCGGGAGGC TTGGGAAGCA GCAGGTTACG AGGTTCGGGG CGTGGCGTTG
TCCGGCATCG CCGCTGAGAA TCTGGCAAGC GGATCGGGCA TCGCGTCGCG CACCATCGCC
AGCCTGGAAC ATGGCTGGGC GCAGGGTCGC GACCTGCTCA GCGCGCGCGA TGTGTTGGTG
ATCGACGAGG CCGGCATGGT CGGCACGCGC CAGTTGGAGC GCGTGCTGTC CCATGCTGCC
GAGGCCGGCG CCAAGGTGGT GCTGGTCGGC GATCCGCAGC AGTTGCAAGC AATAGAAGCG
GGCGCGGCGT TTCGGTCGAT CTTTGACCGC CACGGCGGCG CGGAGATCGG CGAGGTGCGC
CGCCAGCGGC AGGACTGGCA GCGCGACGCC ACGCGCGATC TCGCCAACGG CAAAATCGGC
CACGCGCTTG ATGCCTATCG CTCCCACGGC ATGGTCCATG CTGCCCCGAC ACGAGAGGAC
GCGCGCAAAA ATCTGATCGA CCGCTGGGAC CGCGACCGGC AGGCATCGCC GGACCGCAGC
CGCATCATCC TCACCCACAC CAATGACGAG GTTCATGCGC TCAACGCCGC CGCGCGGGAA
CGGATGCGGG CGGCCGGCGA TCTCGGCGAG GATGTGCGTG TCACGGTCGA ACGCGGCGCT
CGCAGCTTCG CCACCGGAGA TCGCGTCATG TTCCTGCAAA ACGAGCGCGG GCTTGGCGTG
AAGAACGGCA CGCTCGGCGC CATCGAGCAT GTCAGTCAGC AATCCATGTC CGTGTGCATC
GACGATGGCC GTTCCGTTGA ATTCGACCTG AAGGATTACA ACCGCATCGA CCATGGCTAT
GCCGCGACCA TCCACAAGGC GCAGGGCATG ACGGTGGACC GCACCCATGT GCTGGCGACG
CCGGGCCTGG ACGCCCACGC CAGCTATGTC GCTCTTTCCC GGCACCGTGA CGGCATGGAG
CTGCATTACG GCCGTGACGA CTTCACCAGC CAGGACCGGC TCACCCGCAC CCTGTCGCGC
GATCGGGCCA AGGACATGGC GTCGGACTAC GATCGGGTTG ACCCGGTGCA AAACTATGCC
GAGCGGCGCG GCATCACCTT CCGCGCCCGT GTCGCCGAGA TCGTGCGCAA GATCGTGCCC
GAGAGGGTGC GCGGCATGTT CGATGGCCTC CGCCCACCGA CGGTCCCCGC ACCGGAAGCC
AGGTCGGAGC CGGAAAGGGA AAGCGCCGCG GCGGCGGTCC GGCGAACGAC GGACGATGCG
CCGGGAAGGA CCGTGGCAGC GGACAGCGAC GCGGCGCTGC GCCAAGCTCG CACCAAGGCG
CTCATCCGCC ACGCCCGCGC CGTGGATATG ATCTTCGAGA TGCAGCAGCA GGGCGGCAAG
GCCAGCCCGG AGCAGGTGAA GGAATTGCAG GAGGCCCGCA AGGAGTTCGA GGAGGTACGG
CCCTATGGTT CGCACGACGC CGAAGCCGCC TACAAGACGA ACCCGGAACT CGCAGAGCAA
GCCGCTTCGG GCAATCCCGC CCGCGCGATC CGCGCCCTCC AACTCGAAAC CGAGCTGCGC
ACCGCCCCAG CCCGGCGCGC CGACCGCTTC GTGGAACGTT GGCACAAGCT CGACCAAACC
AGCCAGCGTC AGTATCAGGC CGGCGACATG TCCGGTTACA AGACCACGCG GGCAAGCATG
GGCGTCATGG CGAAAAGCCT GGAGCGCGAT CCGCAGCTAG AATCCATCCT CGCCAACCGC
AGGGCCGAAC TCGGCATCCA GATGGAAAGT GGACGCCGGC TCAGCGCGGC CCTTGCCTTT
GCGCACGGTA TCGACATCGG CAGAGGCCGG GGGATCGGAA TCTGA
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| Protein sequence | MRRRSPSRDF FEGGRAYTSF RRALRRGNDL IAMAIYHLHV KVIGRKSGSS AVASAAYRSA
SRLRDDRLER SYDFSAKRGV VHSEVMLPEN APQAWRDRER LWNDVESFEV RKDAQLAREV
EFALPRELTQ RQGIELAHDF VQSEFVDQGM IADVNVHWDM AEDGMPKPHA HVMLTMRAVN
ENGFGPKIRD WNRTEMVERW RERWAEIANQ RLAELDIDAR IDHRSLEAQG IGLEPQSQIG
ATAQRIESQG IEGRGIEAAT NVADRAEMHR QIARGNGARI IADPSIALDA ITQQQSTFTQ
RDMAKFAHRH SDGIDQFNQV IGTMRGAPDL VELGKDGRGE DRFTTRDMIE TEQRLHRATE
LMAERDRHEV QDADRLAARA RAEARGLMLS AEQADALAQV TNGRDLGVVV GHAGTGKSAM
LGVAREAWEA AGYEVRGVAL SGIAAENLAS GSGIASRTIA SLEHGWAQGR DLLSARDVLV
IDEAGMVGTR QLERVLSHAA EAGAKVVLVG DPQQLQAIEA GAAFRSIFDR HGGAEIGEVR
RQRQDWQRDA TRDLANGKIG HALDAYRSHG MVHAAPTRED ARKNLIDRWD RDRQASPDRS
RIILTHTNDE VHALNAAARE RMRAAGDLGE DVRVTVERGA RSFATGDRVM FLQNERGLGV
KNGTLGAIEH VSQQSMSVCI DDGRSVEFDL KDYNRIDHGY AATIHKAQGM TVDRTHVLAT
PGLDAHASYV ALSRHRDGME LHYGRDDFTS QDRLTRTLSR DRAKDMASDY DRVDPVQNYA
ERRGITFRAR VAEIVRKIVP ERVRGMFDGL RPPTVPAPEA RSEPERESAA AAVRRTTDDA
PGRTVAADSD AALRQARTKA LIRHARAVDM IFEMQQQGGK ASPEQVKELQ EARKEFEEVR
PYGSHDAEAA YKTNPELAEQ AASGNPARAI RALQLETELR TAPARRADRF VERWHKLDQT
SQRQYQAGDM SGYKTTRASM GVMAKSLERD PQLESILANR RAELGIQMES GRRLSAALAF
AHGIDIGRGR GIGI
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