| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0660 |
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| Symbol | |
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| ID | 3970638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 716421 |
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| End bp | 718823 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637923776 |
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| Product | ApbE-like lipoprotein |
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| Protein accession | YP_530551 |
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| Protein GI | 90422181 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0716] Flavodoxins
[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.121438 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCGC GTCGATATCA CCTCTGGCTC GGCTGCCTCG CCGGTCCCTT TTTGGTGGTG
CTCGCCGTCA CCGGCGTCCT GCTTGCGGTC GATGCGCTGT GGGCGCGGGC GACCCAACCC
GCCGCAGCGC CTGCCAGCCT GAGCGTCGCC GAGCTTGCCG CGGGCCTTGC CGGCCACGGC
ACTCTCGAAC GGTTGGCGGT GACGCCGGTG GGCACGATCG TCGCCCAATT CGCCGCGCCG
CGCCGTCGCG CCGCGGTCGA CCCGACCGAT CTGTCGCTTC GCCCGGTCGC GGAGACGGGC
GACACGATCC GCACCGCGAC CGAAATCCAC CGCACCCTGA TGATCGGCGA TCGAGGTCGC
CTCATCCTGG CCCTCGCCAC ATGCGCGGGC CTGTTGCTCG CGGCAACCGG CCTCGCACGG
ATCTGGCGCG GCGAACGTGG CGGCGGGGCG CTGCGGCGCC TGCATCGTGG CCTTGGCCTC
ACGTTCGCGC TGCCGTTTGT CGTCTCCGCA GCGACCGGGC TCGGGCTTGC CGTCGCAACC
ATCTTTCCCC TCCAGATCGA CGGCATTCGC CCGGCTTTTC CGGCAGCGTT CGCCGAGGGC
GACCGGCTGC CGGTCGGCGC GGTCGCGGCG CTGGCGTCGG TTGCGGTCGG CGATCTCGAG
GAACTGGTGC TGCCGCGCGC CGACGATGCC AATGACGGTT ATTTTCTGGC GACCGCCGAT
CGCTTCGCCT GGATCGATCC GGTGAGCGGC GGTGTTGCGG CGGCGAGCGA GCGCCCGGTG
ATGCATCGGC TGGCGGCCGC CGTCCTGCGC TTCCACGCCG GGCGCAGCAT GACGGCGCTG
GCTGTCATCT TCGGTCTTGC CGCCGCCGCA GTCGGGTTGC TCGGACTCAC CGGCCTCGCT
GTTGGCGGGA TTGCGATCGC GATCCGTCGA CGACGGCCCG TCGTCAGCGG CGCCGCCGCC
AAGGCGGATA CCATCATTCT CGTCGGCAGC CAGGGCGGCA CGACATGGGG CTTCGCCGAG
CGGTTGGCGG CGCGGCTGAT CGAGGCCGGC CACCTGGTCG ATCTCGCGGC GATGAACAAC
CTTGCGTCGG AATATCCGAA AGCCCAGCAG CTCATCGTCC TCACCGCGAC CCACGGTATC
GGCGAGCCGC CGGATTCTGC CGACCGGTTT CTCGCGCGCC TGCCGCAGGC GACCCTGCCA
CCGGCCTTCG CCGTGCTTGG ATTTGGCGAC CGCGAGGCCA AAGCCTTCTG CGGCTTTGCC
GAAGCGGTCG ACGCCGCGTT GCTGGCCACG GGGGCCAAGC CGATGCTGTC GCTCGAGCGC
ATTCATCGGC GGTCCGAAAC GGACTATGCG GCCTGGGTCG AGCGGCTGCT TGCCGCGCTC
GGTCATGGTC GGCAGGCCAG CCTTCCGACA GACGCGTCGA CTGCTCGCCA ATGGCCGGCG
CCCGTGGTCC GCGGATCGCC GACGCGGCGG GTGCTCTCCG GAACGGCGAT GGGCTCGCGT
TGGTCGGTGC AGCTTTGGCT GCCGCAGGAT CACGACCTGT CCGATCTCAC GGCGCGTCTT
TCGGCCCGTA TCGCCAGGAT CGAAACATCG TTGTCTCGCT TCCGCGGCGA CTCCGAAGTC
ATGGCCTTCG ACCGGGCGCC GTGCGACGTG TGGCAATCGG TATCGCGCGA TCTGGCCGAA
GTCCTTGCCG TCGGCCTCGA CATCGGGCGT CGCTCGGGCG GGGCCTTCGA CGTCGGGCTC
GCAGCCGAAG TGGCGGCCTG TGGTTTCGGC TCCGGGTGGA GCGGCAGCGG CGTGGCGCGG
GATCGGATCG TTGCTGCGCA TGAAACGATT GAACTCGATC GCGGCGCTCG GCGGATCCGC
AAGCGCGCTG CCGTCTCGCT CGATCTCGCC GGCATTGCCA AGGGCTGGGC GGTCGACGAG
CTGTCGCGTC TCGTCGCCGA GGCAGGCTTT CCGGCGCATC TCGTGGCGCT CGACGGCGAG
CTCCGCGCCG GCGCCGTGCA GCCGGACGGG CGGCCGTGGG CGATCGGTCT CGAGGCGCCC
GCGGTCGGCC GCCGCGCCGT GATCGGCCAC ATCGACCTCA TCAAGCGGTC GGTCGCGACC
TCCGGCAACA ATCGCCGCTT CGCTGCGAAC GGCGGCCACA CCCTCGACCC GGCGACCGGA
CGCTCGGTCG CCGCTGGGCC GGCCTCGGTG AGCGTGTTCG CTTCGACCTG CATCGTTGCC
GACGCCTGGG CGACGGCGCT CATGGTGCGC GGCCGTGATG GCCTCGCCGC AGCGCGGGCT
GCCGGCGTTG AAGCCCTGTT CGTAGCGCGC GAACCGCTTG CGATGCCACC GGCGACGCGT
GCTGCGCGGT GGCTCGGCGC GCAGCTCTCA AATCACAGGA GGTGCCGCGA CGCACAGCCC
TGA
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| Protein sequence | MPARRYHLWL GCLAGPFLVV LAVTGVLLAV DALWARATQP AAAPASLSVA ELAAGLAGHG
TLERLAVTPV GTIVAQFAAP RRRAAVDPTD LSLRPVAETG DTIRTATEIH RTLMIGDRGR
LILALATCAG LLLAATGLAR IWRGERGGGA LRRLHRGLGL TFALPFVVSA ATGLGLAVAT
IFPLQIDGIR PAFPAAFAEG DRLPVGAVAA LASVAVGDLE ELVLPRADDA NDGYFLATAD
RFAWIDPVSG GVAAASERPV MHRLAAAVLR FHAGRSMTAL AVIFGLAAAA VGLLGLTGLA
VGGIAIAIRR RRPVVSGAAA KADTIILVGS QGGTTWGFAE RLAARLIEAG HLVDLAAMNN
LASEYPKAQQ LIVLTATHGI GEPPDSADRF LARLPQATLP PAFAVLGFGD REAKAFCGFA
EAVDAALLAT GAKPMLSLER IHRRSETDYA AWVERLLAAL GHGRQASLPT DASTARQWPA
PVVRGSPTRR VLSGTAMGSR WSVQLWLPQD HDLSDLTARL SARIARIETS LSRFRGDSEV
MAFDRAPCDV WQSVSRDLAE VLAVGLDIGR RSGGAFDVGL AAEVAACGFG SGWSGSGVAR
DRIVAAHETI ELDRGARRIR KRAAVSLDLA GIAKGWAVDE LSRLVAEAGF PAHLVALDGE
LRAGAVQPDG RPWAIGLEAP AVGRRAVIGH IDLIKRSVAT SGNNRRFAAN GGHTLDPATG
RSVAAGPASV SVFASTCIVA DAWATALMVR GRDGLAAARA AGVEALFVAR EPLAMPPATR
AARWLGAQLS NHRRCRDAQP
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