| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0606 |
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| Symbol | |
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| ID | 3970733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 658142 |
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| End bp | 659317 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637923722 |
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| Product | pseudouridine synthase RluD |
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| Protein accession | YP_530499 |
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| Protein GI | 90422129 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.32929 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACCA GAACGGCCGC CACCGCCAGC GCCGTGGTCA GGCCCGCAAT CAGCATCAAG
CGACGCACCC GCGCGAACAG CGCGGCCTGC TCGGGGGTCG GTTCGGGCGC AACAGTTTCG
GTCATGCAAG GCTCAATTTT GGAAAACCCG TTGGAAAATA CAGGTCGGCT GCTGGAAGTC
ACCGTCGCCG GCGACGAGGG CGCGGTCCGG CTCGACCGCG TGCTGGCGCT GCGGGCGCCG
GAACTGTCGC GGTCGCGGCT GAAGGCGCTG ATCCTCGCCG GCCAGGTCCG GTTGCGACCT
GCCGACGCCA GCGCCGCCCT GCCGACCCCG CTTCGCGATC CCGCTTATCA TGTCGAAGCC
GGCGATACGA TCACAATCGA CGTGCCGCCG GCGGTCGCCG CCGAGCCCGC CGGCGAGGCG
ATCGCGCTCG ATATCGTCTA TGAGGACGAC GACATCATCG TCATCGACAA GCCGAAGGGC
CTGGTGGTGC ATCCCGCCGC CGGCCACGAG ACCGGCACCC TGGTCAACGC CTTGATCGCG
CATTGCGGCA ATAGCCTGTC CGGGATCGGC GGGGTGCGGC GGCCCGGCAT CGTGCACCGG
CTCGACAAGG ACACCACCGG GTTGATGGTG GTCGCCAAGA ACGATAAGGC CCATAAATCC
TTGAGCGAGC AGTTCGCCGA CCACGGCCGC ACCAACGAGA TGCGCCGCGG CTACAAGGCT
TTCATCTGGG GCGCCCCGAA CCGGCCGCAC GGCACCGTCG ACGCGCCGAT CGACCGCCAC
CCGTTCGCCC GCGAGAAGAT GGCGGTGCGC GACGGCGGCC GCGAGGCGGT GACGCATTGG
GAGGTCGAGG ACACGTTTCT TGGCCGCGGT GGCAAGCCGG TGGTGAGCCT GTTGGCCTGC
CAGCTGGAGA CCGGCCGCAC CCATCAGATC CGGGTGCATC TCGCCCATAT CGGCCACCCG
CTGCTCGGCG ACGGCGTCTA TGGCCCGCAC TTCAAAACCA AGGCCAATGC ACTCAATCTG
CCGGCGCAGG CCGCGCTCGC GGCGCTCGGC CGGCAGGCCT TGCACGCTTA TCTTTTGGCC
CTCGAGCACC CGGTTTCCGG CGAGATTCTG GAGTGGACCG CCGAGCTGCC GGCCGACCTG
GCGTTGTTGC GAACCGCTCT AAAAGCGACG GAATGA
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| Protein sequence | MATRTAATAS AVVRPAISIK RRTRANSAAC SGVGSGATVS VMQGSILENP LENTGRLLEV
TVAGDEGAVR LDRVLALRAP ELSRSRLKAL ILAGQVRLRP ADASAALPTP LRDPAYHVEA
GDTITIDVPP AVAAEPAGEA IALDIVYEDD DIIVIDKPKG LVVHPAAGHE TGTLVNALIA
HCGNSLSGIG GVRRPGIVHR LDKDTTGLMV VAKNDKAHKS LSEQFADHGR TNEMRRGYKA
FIWGAPNRPH GTVDAPIDRH PFAREKMAVR DGGREAVTHW EVEDTFLGRG GKPVVSLLAC
QLETGRTHQI RVHLAHIGHP LLGDGVYGPH FKTKANALNL PAQAALAALG RQALHAYLLA
LEHPVSGEIL EWTAELPADL ALLRTALKAT E
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