| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0493 |
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| Symbol | |
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| ID | 3970255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 534059 |
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| End bp | 535780 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637923609 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_530387 |
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| Protein GI | 90422017 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0969202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0933815 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTTGC AAGGATCGCC GTGTTTGCTG GGTATTATGC CGATCCGCGC TACATCCCAG
TCCCACGCGC TTGCCCAACA GTCGAATTCG CGCAGCGGTT CGGCGCCTCT CGATGGCGGG
CCGGAGCAGG CCGCAACCCT CGCCCTCAGC GTCTTCATGC AAATGGGCCA GGCCGCAGCC
CTGATTGGCG ACGACGGCCG GTTGTTGCTG AGCAATTCGG TGTTCGATGA TCTGTTCGGC
GCCGAGGGGG CCGCGGGGAT TCTCGATCCA TTCTCCAGCG AAGCCACCCG CAAGGGCAGC
AAGATCGATC GCCAAGTCAG CTTTCCGGAC GGCCGCACCT TCGGAATCGA GATCTTGCCG
GTGCAGGAGG GGCGGCTGAT CACCGCCGGC GATATCACCG ATCATCTGGC CGAGCGGGCC
CGCGAGGCCG AAGCCGCGCG CACCGATCGG CTGACCGGTC TCGGCAACCG GCTGATGTTC
CGCGAACGGT TGAGCAAGAT CCTGGGCGAA GCCGATCTGG CCGGCGGCGC CGCGATGCTG
GTGGTCGATC TCGGTCGCTT CAAGGCGCTC AACGAATCGC TCGGCCACAA GATCGGCGAC
GCGCTGCTCG GCTTGGTCGC CAAGCGGATT CGCTCCGCGG TCGGAGCCGG CGACGTCGTG
GCAAGGCTGG AAGCCGACAA GTTCGGAATC ATCCAGACCG GGCGGCCGCA GGCGCAATCC
GCCGACGCGC TGGCGATCCG GCTGGTCGAT CTGATCGGCC GTTCCTATCT GCTCGACGGT
CAATTGATCA ATGTCGCCGC CAGCATCGGC GTCGTGCTGC TGTCGGACGG CGTCGACGAC
GCCGACAACG TCATGAAGAA CGCCGATCTT GCGCTCCATC GCGCCAAAAA GGACGGTCAC
GGCTCCTACC ACTTCTTCGA GTCGGCGATG GACGAGCGGA TGCAGGCCCG CCGCAAACTC
GAGATCGATC TTCGCCGGGC GCTGGCGCTG CGCGAATTCG CGCTGGTGTA TCAGCCTCAG
GTCAATCTGA AGTCGAACAC CGTCACCGGC TTCGAAGCGC TGCTGCGCTG GCAATGCCCG
AAGCGCGGCG CGGTGTCGCC GCTGGATTTC ATTCCGCTCG CCGAAGAGAC CGGGGTGATC
ACGCCGATCG GCGAATGGGT CCTGCGCACC GCGTGCTGCG AGGCCGCGAA ATGGCCGCCC
GAACTCAGCG TTGCGGTCAA TGTCTCGGCG GTGCAGTTCG CCGATCCCAA TCTGGTGTCG
ACCATCATCT CGGCGCTGGC CGACAGCAGG CTGGATCCGC GCCGCCTCGA ACTCGAAATC
ACCGAGAGCG TGATGCTGGA CGCCCGCGGC ACGGCGCTTG CGGTGCTGCA GACGCTACGC
ACCATGGGAG TGCGGGTCGC GCTCGACGAT TTCGGCACCG GCTACTCGTC GCTCGGCTAT
CTGCGTAGCT TCCCGTTCGA CAAGATCAAG ATCGATCAGA GCTTCGTCCG CGGCACGTCG
AACGATCCGG CCGGCCAGGC GATCGTCCGG GCGGTCGCCG CACTCGGCCA CAGCCTCGGC
ATGGCCACCG TCGCCGAAGG GGTCGAAACC GCCGAGCAAC TGGCCCGCGT CGCCGCCGAC
GGCTGCACCG AGGTGCAGGG TTATTTCTTC AGCCGTCCGA TCGCTCCAGA GCGCATCGAG
GGGTTTCTCT CGACCAGAAA CCAAGGCGAG AATCTGATGT GA
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| Protein sequence | MLLQGSPCLL GIMPIRATSQ SHALAQQSNS RSGSAPLDGG PEQAATLALS VFMQMGQAAA
LIGDDGRLLL SNSVFDDLFG AEGAAGILDP FSSEATRKGS KIDRQVSFPD GRTFGIEILP
VQEGRLITAG DITDHLAERA REAEAARTDR LTGLGNRLMF RERLSKILGE ADLAGGAAML
VVDLGRFKAL NESLGHKIGD ALLGLVAKRI RSAVGAGDVV ARLEADKFGI IQTGRPQAQS
ADALAIRLVD LIGRSYLLDG QLINVAASIG VVLLSDGVDD ADNVMKNADL ALHRAKKDGH
GSYHFFESAM DERMQARRKL EIDLRRALAL REFALVYQPQ VNLKSNTVTG FEALLRWQCP
KRGAVSPLDF IPLAEETGVI TPIGEWVLRT ACCEAAKWPP ELSVAVNVSA VQFADPNLVS
TIISALADSR LDPRRLELEI TESVMLDARG TALAVLQTLR TMGVRVALDD FGTGYSSLGY
LRSFPFDKIK IDQSFVRGTS NDPAGQAIVR AVAALGHSLG MATVAEGVET AEQLARVAAD
GCTEVQGYFF SRPIAPERIE GFLSTRNQGE NLM
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