| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0468 |
|---|
| Symbol | |
|---|
| ID | 3970230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 504521 |
|---|
| End bp | 505942 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637923584 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_530362 |
|---|
| Protein GI | 90421992 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.910106 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGC CGCGCAAGCT GCACATCAAA TCCTTCGGTT GCCAGATGAA TGTCTATGAC
GCCCAGCGCA TGGTCGATGC GCTGGCGCCG GAGGGGTTTG TCGAGACCGC GAATGCCGAC
GAGGCCGACC TGGTCATCCT CAACACCTGC CACATCCGGG AAAAGGCCTC CGAGAAGGTC
TATTCCGAGC TCGGCCGGCT GCGCGTCGCC AAGGACGAGG CGGCCTTGCA GGGCCGCCGC
ATGAATATCG CGGTGGCGGG CTGCGTGGCG CAAGCCGAGG GCGCCGAGAT CATCCGCCGG
CAGCCCGCGG TCGACGTCGT GGTCGGGCCG CAGAGCTATC ACCATCTGCC GCAATTGCTG
GCTGAGGCCG CGCGCGGCGG CCGCGCGCTG GAAACCGAGT TCCCGGTCGA CGACAAATTC
GGCTTTCTAC CGCCGCCACA GCCCGACGCG ATCCGCGCCC GCGGCATTTC GGCCTTCGTC
ACCGTGCAGG AAGGCTGCGA CAAGTTCTGC ACCTTCTGCG TGGTGCCCTA CACCCGCGGC
GCCGAGGTCT CCCGCCCGGT CGACAAGATC GTCGAGGACG TCCGGCGGCT GGCCGACAAC
GGCGTGCGCG AAATCACCCT GATCGGGCAG AACGTCAACG CCTATCACGG CGACGGGCCG
GACGGCCGGC CCTGGCCGCT CGGCGCGCTG CTGCATCATC TGGCCAAGAT CCCCGGCATC
GTGCGGCTGC GCTATTCCAC CAGCCATCCG CGCGATGTCG ATCAGTCGCT GATCGACGCG
CACCGCGATC TGCCGGCCTT GATGCCGTTC GTGCATCTGC CGGTGCAGTC CGGTTCCGAC
GCGATTCTGG CGGCGATGAA CCGCAAGCAT AGCGCCGACG ACTATCGCCG GCTGGTCGAC
CGTTTTCGCA GCGCCAACCC GGCGATCGCC TTCTCGTCGG ACTTCATTGT CGGCTTCCCC
GGCGAGACCG ACGAAGATTT CGCCGCCACC CTCGCGCTGG TCACACAAAT CGGCTACGCT
GGCGCCTATT CGTTCAAGTA TTCGCCGCGG CCCGGGACGC CAGCGGCGGA GTTGCAGGAG
ACAGTCTCAG CGGCGGTCAT GGACGAGCGA TTGGTACGGC TCCAGGAGTT GATCGACAGC
CAGCAGGCGG CCTTCAACGC GGCTGTGATC GGCACCACCG TCGAGGTGCT GTTCGAGCGC
GCCGCGCGCA ATCCGGGCCA GATCGTCGGC CGCACCGCCT ATCTGCAGCC GGCCCATGTG
ATGGCTGCGC CGGATATCAT CGGCCAGGTG CTGCCGGTCC GGATCGACAG CCTGGAGCGC
TACAGCCTGA TCGGCGAACT CGCAGCGCCG CAGCAACACT CAGGCTTCGC AACGCGATCC
GAAGATTCCC CGCAGTCCCT GCCGATCACC ACGGGAGCCT GA
|
|---|
| Protein sequence | MTQPRKLHIK SFGCQMNVYD AQRMVDALAP EGFVETANAD EADLVILNTC HIREKASEKV
YSELGRLRVA KDEAALQGRR MNIAVAGCVA QAEGAEIIRR QPAVDVVVGP QSYHHLPQLL
AEAARGGRAL ETEFPVDDKF GFLPPPQPDA IRARGISAFV TVQEGCDKFC TFCVVPYTRG
AEVSRPVDKI VEDVRRLADN GVREITLIGQ NVNAYHGDGP DGRPWPLGAL LHHLAKIPGI
VRLRYSTSHP RDVDQSLIDA HRDLPALMPF VHLPVQSGSD AILAAMNRKH SADDYRRLVD
RFRSANPAIA FSSDFIVGFP GETDEDFAAT LALVTQIGYA GAYSFKYSPR PGTPAAELQE
TVSAAVMDER LVRLQELIDS QQAAFNAAVI GTTVEVLFER AARNPGQIVG RTAYLQPAHV
MAAPDIIGQV LPVRIDSLER YSLIGELAAP QQHSGFATRS EDSPQSLPIT TGA
|
|---|
| |