| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0397 |
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| Symbol | rpsA |
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| ID | 3970886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 429946 |
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| End bp | 431643 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637923511 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_530291 |
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| Protein GI | 90421921 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0168105 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTCGA CTGCTTCCTA TAATCCTTCC CGCGACGATT TTGCCGCGAT GCTCGACGAG
TCTTTCGCCG GCGGCAATCT GCAGGAAAGC TCTGTCATCA AGGGCATTGT TGTTGCGATC
GAGAAGGACA TGGCCGTCAT CGACGTCGGC CTGAAGACCG AAGGCCGCGT GGCGCTGCGC
GAATTCGCCG GCCCCGGCAA AGAAAGCGAA CTCAAGGTCG GCGACACCGT CGAAGTGTTC
CTCGACCGCA TCGAGAATGC GCTCGGCGAA GCCGTGCTGT CGCGCGACAA GGCGCGCCGC
GAGGAAAGCT GGGGCAAGCT CGAGAAGGCC TTCAACAATA ACGAGAAGGT CCACGGCGTC
ATCTTCAACC AGGTCAAGGG CGGCTTCACC GTCGATCTCG ACGGCGCGGT GGCGTTCCTG
CCCCGCTCGC AGGTCGACAT CCGGCCGATC CGCGACGTCG CGCCGTTGAT GAACAACTCG
CAGCCGTTCC AGATCCTCAA GATGGACCGC CGCCGCGGCA ACATCGTGGT GTCGCGCCGC
ACGGTTCTCG AAGAGACCCG CGCCGAGCAG CGCCAGGAAC TGGTGCAGAA CCTCGAAGAA
GGTCAGGTGA TCGACGGCGT GGTCAAGAAC ATCACCGATT ACGGTGCGTT CGTCGACCTC
GGCGGCATCG ACGGCCTGCT GCATGTGACC GATATCGCCT GGCGCCGGGT CAATCACCCG
ACCGAAGTGC TCACCATCGG CCAGACCGTC AAGGTCAAGA TCATCAAGAT CAACCACGAG
ACCCACCGCA TTTCGCTCGG CATGAAGCAG CTGCTGGACG ATCCGTGGCA GGGCATCGAG
GCGAAGTACC CGCTGAACGC GCGCTTCACC GGCCGCGTCA CCAACATCAC CGACTACGGC
GCCTTCGTCG AACTGGAGCC GGGCATCGAA GGCCTGATCC ACGTCTCGGA AATGTCGTGG
ACCAAGAAGA ACATGCACCC CGGCAAGATC GTCTCCACCT CGCAGGAAGT CGAAGTGCAG
GTGCTCGAGG TCGATTCGGT GAAGCGCCGG ATTTCGCTCG GTCTGAAGCA GACCATGCGC
AATCCGTGGG AAGTGTTCGT CGAGAAGTAC CCGGTCGGTT CCACCGTCGA AGGCGAAGTC
AAGAACAAGA CCGAGTTCGG TCTGTTCCTG GGTCTCGACG GCGAAGTCGA CGGCATGGTG
CATCTGTCGG ACCTCGACTG GAAGCAGCCG GGCGAGCAGG TCATCGACAA CTTCAAGAAG
GGCGACGTCG TCAAGGCGAT CGTGCTCGAT GTCGATGTCG AGAAGGAGCG CATCTCGCTC
GGCGTCAAGC AGCTCGAAGG CGACCCCTTC GCCGAGCCGG GCGACGTCAA GAAGGGCGCG
ATCGTGACCT GCGAAATCAT GGACGTGAAG GAATCGGGCA TCGACGTGCA GATCGTCGGC
ACCGACTTCA ACACCTTCAT CAAGCGCTCG GAGCTCGCGC GTGAGCGTTC CGATCAGCGC
GCCGAACGCT TTGCGGTCGG TGAGAAGGTC GACGCCCGGG TGATCCAGTT CGACAAGAAG
GCCCGCAAGG TCCAGGTGTC GATCAAGGCG CTCGAAGTCG CCGAAGAGAA GGAAGCCATC
GCGCAATACG GGTCTTCGGA TTCGGGAGCG ACGCTGGGCG ACATTCTCGG CACCGCGCTG
AAGCAGCGCG ACAAATAA
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| Protein sequence | MASTASYNPS RDDFAAMLDE SFAGGNLQES SVIKGIVVAI EKDMAVIDVG LKTEGRVALR
EFAGPGKESE LKVGDTVEVF LDRIENALGE AVLSRDKARR EESWGKLEKA FNNNEKVHGV
IFNQVKGGFT VDLDGAVAFL PRSQVDIRPI RDVAPLMNNS QPFQILKMDR RRGNIVVSRR
TVLEETRAEQ RQELVQNLEE GQVIDGVVKN ITDYGAFVDL GGIDGLLHVT DIAWRRVNHP
TEVLTIGQTV KVKIIKINHE THRISLGMKQ LLDDPWQGIE AKYPLNARFT GRVTNITDYG
AFVELEPGIE GLIHVSEMSW TKKNMHPGKI VSTSQEVEVQ VLEVDSVKRR ISLGLKQTMR
NPWEVFVEKY PVGSTVEGEV KNKTEFGLFL GLDGEVDGMV HLSDLDWKQP GEQVIDNFKK
GDVVKAIVLD VDVEKERISL GVKQLEGDPF AEPGDVKKGA IVTCEIMDVK ESGIDVQIVG
TDFNTFIKRS ELARERSDQR AERFAVGEKV DARVIQFDKK ARKVQVSIKA LEVAEEKEAI
AQYGSSDSGA TLGDILGTAL KQRDK
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