| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0387 |
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| Symbol | |
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| ID | 3970876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 418199 |
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| End bp | 421693 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637923501 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_530281 |
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| Protein GI | 90421911 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.625573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGTC TGCGCGTGAT TCCCCCCGCC GCCACCGAGC GGCAGGTGCA GGCCTCCGAT
CCCACCGCCT CGGTGTTCGT CTCCGCCAAT GCCGGCTCCG GCAAGACCCA CGTGCTGGTG
CAGCGGGTGA TCCGGCTGCT GCTCGCCGGC GTGCCGCCGG AGAAGATTCT CTGCATCACC
TTCACCAAGG CGGCCGCCGC CAACATGGCG CAGCGGGTGT TCACCACGCT CGGGCATTGG
GTGACGCTGA GCGACGATAG CCTCGACGCC GCGATCCGCG CGGCCGGCAT CGCCCAGCCC
GACTCGAAGC TGCGGATGCG GGCGCGGGAA TTGTTCGCCT GCGCGCTGGA GACCCCGGGC
GGGCTCAAGG TGCAGACTAT CCACGCGCTG TGCACCCGCT TGCTGCAGCA GTTTCCGTTC
GAGGCCAACG TGCCGGCGCG GTTCGCGGTG CTGGATGAGC GCGACCAGAC CGAGATGATG
GAGCGCGCCA GTCTCTCGGT GCTGCTGCAG GCGGCGCAAG CGCCGAATAG CGCCGCCGGC
AAGGCTTTGA CCGTGGCGAT GACCAGCGCC GCCGACGTGA CGTTTCGCGA CGTGGTGCGC
GACGCCTGCT TCAGCCGCGA CAAGTTCATG GCCTGGATCG CGCGCGCCGG CTCCACCGAG
GCTGCGATGG CGCAGCTTTC CGCGGCGCTC GGCGTCGCCC CCGACGACAG CTGCGCCGCG
GTCGATCAGG AAATCGTCGA CGGGCCGAAC CTGCCGCGGG CGCGCTGGGA AAAGGCCGCG
TCGATTCTCG AGGGCGGCAG CAAGACCGAC GGCGATCAGG CCGAGCGGCT GCGGCAGGCC
GCGACGCTCA CCGGCAACGA TCAGATCGCG CGCTATCTGC AAATCTTCCT GACCAAGGAT
TTCACCCCGC GCAAGACGCT CGCCACCAAG AAGATCACCG ACGCGCGGCC CGACCTGGTC
GCGGCGATGA AGCGCGAATG CGAGCGGATC GGACCGCTGT TGGAGCGGCG CCGGGCGCTG
GCGCTGCGCG AGCGCACCCA AGCCTTGCTG GTGATCGCCA GCGACGTCGC CGCCGACTAC
GCCCGGCAGA AGCAGGATCG CGGGCTGCTC GACTACGACG ACCTGATCGA CAAGACGCTC
GACATGCTGA ACCGCATCTC GTCGGGCTGG GTGCACTACA AGCTCGACCG CGGCGTCGAC
CACGTGCTGA TCGACGAGGC GCAGGACACC AGCCCGCGGC AATGGGACAT CGTCGACCAT
TTGATCGCCG AATTCACCGC CGGTGTCGGC GCGCGCGACG TCAAGCGCAC CATCTTCGCG
GTCGGCGACG AGAAGCAGTC GATCTTCTCG TTCCAGGGCG CCTCGCCGCG CGAATTCGCC
CTGCGCCGCA GCGCGCTGCA GACCCGCTTC CGCAACGCCG AGCTGAAATT CGATCCGATC
AGCTTCAACT ACTCGTTCCG CTCGGGCGCC GCGATCCTGC AATCGGTCGA CCACGTGTTT
CGCGACCAGG CGATCTATCG CAGCATCCAC GCCGACACCA CCTACCCGAT CCACGAATCG
CTGGCCGATG CCGGCCCCAG CCTGATCGAT CTGTGGGAGC TGCAGCAGCC CGACGAACGC
CAGGATCTCG AAGGCTGGCG CGCGCCGTTC GACGCGCTGC CGGAGACCAG CCCCGAGGTG
AAGCTATCGC AGCGGGTGCA GGCCGAGATC GCCGAGTTGA TCGGCAACGG CACGCTGACC
GGGCCGAAAG GCGATCGCCG CGCGTTGCGC TATGGTGACG TGCTGATCCT GGTGCGGCGG
CGCGGCAAGG CGTTCGACGC CATCATCCAG GCCTTGAAGC GCGGCGGCAT TCCGGTGGCC
GGCGCCGACC GGCTGAAGCT GACCGAGCAC ATCGCCATCA TCGACCTGAT GAATCTCGCC
GATGCGCTAT TGCTGCCGCA GGACGATCTG GCGCTGGCGG TGGCGCTGAA GAGCCCGTTG
TTCGGGCTCG ACGACGACGA CCTGTTCAAG CTCGCCTGGC AACGCAAGGG TAGCCTGCGC
GACGCCTTGG CGGCGCACGC CGCCGAGGAC GGCAAATTCA ACACCGCACA TCGGCGGCTG
CAAGACTGCG AGAAGCGCGC CCGCGCGGAC ACCCCGTTCG CGTTCTACGC CTGGCTGCTC
GGCGGCGACG GCGGCCGCGC GCGGATCTTG CGCCGGCTCG GCCATGAGGC CACCGACGCG
CTCGACGAAT TCCTCGAACT GGCGCTCGGC TATGAGCGCA AGGCGCCGGC CTCGCTGCAG
GGCTTCATGG CCTGGCTGCG CGCCGCCGAC ACCGAGGTGA AGCGCGACAT GGAAATTTCC
CGCGACGAAG TCCGGGTGAT GACGGTGCAT GGCGCCAAGG GGCTGGAGGC GCCGGTGGTG
TTCCTGGTCG ACACCACCTC GTCGCCGGCC GACACCCAGC GGCTCAATCT GGTGCATCTG
CCGCAGGGCA ATGCCGCACT GAGCGGGCCG AGCGTCGCGG TGTGGGCCGG CAAGAAGGCC
GACGATCCGC CGGTGGTGGC GAACGCCCGC GCGGCGATGA TCGCCGAGAC CGAGGACGAA
TATCGCAGGC TGCTGTACGT GGCGATGACG CGCGCCGCCG ACCGGCTGAT CGTCGGCGGC
TGCCAGCCCG GCAACCGCGC CGAGGTACGA CCGCTGTCGT GGTACGACCT GATCTGCAAG
GGCCTCGAAG GCTCCGGCCT GGCGATGCAG ACCGTGCCGC CGCCGGACGG CGTGGTGAAG
CGCTATTGCC GCCAAGAAGA TCTTGTCCCC GAACAGGACC AGGCCGCAGC GCCCCCGCGC
GTGGCGGCGC CGGCGCCGCA ACCGCTGCCG GCCTGGCTGA ACCAACCCGC CGCGCCGACG
CCTCTCGCCG AGCGGGTGTT GCGGCCCTCC GACGATGCCG ACAGCCGCCG CAGCCGCGCC
GAGGACAGCA GCGCCCCGCG CGCCCAGGCG CGGCAGCGCG GCCAATTGGT GCATCGGCTG
CTGCAGTCGT TGCCGGAGCT GCCGCGCGAG CGCCGCGCCG CCGCCGCGGC GCGCTATCTG
GCGCGCAACG CCAAGGATCC GGTCTGGACC GAGCCGGACC GCGCCGCGCT GGCCGTTTCG
GTGTTGGCGC TGATCGACGA TCCGCGGCTC GCCGCCTTGT TCGGCCCCGG CAGCCGCGCC
GAAGTGCCGA TCGCCGGCCG GCTGACTCGC CTCGGGGGCG ACACGGTGCT GGTGTCGGGC
CAGATCGACC GGCTGCTGGT GACGCCGAGC GAGGTGCTGC TGGTGGATTT CAAGACCAAT
CAGGCGCCGC CCCGCGCGCT GGCCGAGATC CCTTCGGGAT ATCTGCGGCA GCTCGCGCTG
TATCGCGCGG TGCTCGCCAA CCTATACCCC GGCCGGACGC TCCGGGCCGC CCTGATATGG
AGCGAAGTCG CTGAAATCAT GGAGATTTCC GACAACGCGC TGGACGCAGG GCTGGCAGCC
ATCATGTCCG CGTGA
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| Protein sequence | MSSLRVIPPA ATERQVQASD PTASVFVSAN AGSGKTHVLV QRVIRLLLAG VPPEKILCIT
FTKAAAANMA QRVFTTLGHW VTLSDDSLDA AIRAAGIAQP DSKLRMRARE LFACALETPG
GLKVQTIHAL CTRLLQQFPF EANVPARFAV LDERDQTEMM ERASLSVLLQ AAQAPNSAAG
KALTVAMTSA ADVTFRDVVR DACFSRDKFM AWIARAGSTE AAMAQLSAAL GVAPDDSCAA
VDQEIVDGPN LPRARWEKAA SILEGGSKTD GDQAERLRQA ATLTGNDQIA RYLQIFLTKD
FTPRKTLATK KITDARPDLV AAMKRECERI GPLLERRRAL ALRERTQALL VIASDVAADY
ARQKQDRGLL DYDDLIDKTL DMLNRISSGW VHYKLDRGVD HVLIDEAQDT SPRQWDIVDH
LIAEFTAGVG ARDVKRTIFA VGDEKQSIFS FQGASPREFA LRRSALQTRF RNAELKFDPI
SFNYSFRSGA AILQSVDHVF RDQAIYRSIH ADTTYPIHES LADAGPSLID LWELQQPDER
QDLEGWRAPF DALPETSPEV KLSQRVQAEI AELIGNGTLT GPKGDRRALR YGDVLILVRR
RGKAFDAIIQ ALKRGGIPVA GADRLKLTEH IAIIDLMNLA DALLLPQDDL ALAVALKSPL
FGLDDDDLFK LAWQRKGSLR DALAAHAAED GKFNTAHRRL QDCEKRARAD TPFAFYAWLL
GGDGGRARIL RRLGHEATDA LDEFLELALG YERKAPASLQ GFMAWLRAAD TEVKRDMEIS
RDEVRVMTVH GAKGLEAPVV FLVDTTSSPA DTQRLNLVHL PQGNAALSGP SVAVWAGKKA
DDPPVVANAR AAMIAETEDE YRRLLYVAMT RAADRLIVGG CQPGNRAEVR PLSWYDLICK
GLEGSGLAMQ TVPPPDGVVK RYCRQEDLVP EQDQAAAPPR VAAPAPQPLP AWLNQPAAPT
PLAERVLRPS DDADSRRSRA EDSSAPRAQA RQRGQLVHRL LQSLPELPRE RRAAAAARYL
ARNAKDPVWT EPDRAALAVS VLALIDDPRL AALFGPGSRA EVPIAGRLTR LGGDTVLVSG
QIDRLLVTPS EVLLVDFKTN QAPPRALAEI PSGYLRQLAL YRAVLANLYP GRTLRAALIW
SEVAEIMEIS DNALDAGLAA IMSA
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