Gene RPC_0354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_0354 
Symbol 
ID3970958 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp373978 
End bp374979 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content65% 
IMG OID637923468 
ProductD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 
Protein accessionYP_530248 
Protein GI90421878 
COG category[R] General function prediction only
[H] Coenzyme transport and metabolism
[C] Energy production and conversion 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGTTA AGAAAAAGCC TCTGGTTGTC GTCACCCGCA AGCTGCCGGA CTCGATCGAG 
ACCCGGATGC GCGAGCTGTT CGACGCGCGC CTCAATCTCG ACGACGAGCC GATGAGCCCG
GAGGCGCTGG CCGAGGCGGT GCGCACCGCC GATATTCTGG TCCCCACCGT CACCGACGAG
ATCACCGAAG AGATTTTGCA GCAGCCAGAC TCCCGGCTGA AGCTGATCGC CAATTTCGGC
AACGGCATCG ACAACATCAA CGTCGCCGCC GCGCATGCCC GCGGCATCAC CGTGACCAAC
ACGCCGAAGG TTTTGACCGA AGACACCGCC GACATGACCA TGGCGCTGAT TCTCGCGGTG
CCGCGGCGGC TGATCGAGGG CGCCTCGCTG TTGACCGAAG GCCGGGATTG GCCGGGCTGG
TCGCCGACCT GGATGCTGGG GCGGCGGCTC GGCGGCAAGC GGCTCGGCAT CATCGGCATG
GGCCGGATCG GCCAGGCGGT GGCGCGGCGC GCCCGCACTT TCGGGCTGCA GATCCATTAT
CACAACCGCC GCCCGGTGGC GCCGAAGATC GCCGACGAGT TGAGCGCGAC CTATTGGGAG
AGCCTCGACC AGATGCTGGC GCGGATGGAC ATCATCTCGG TGAACTGTCC GCACACGCCG
GCGACCTTCC ATCTGTTGTC GGCGCGCAGG CTGAAGCTGA TCCGCAAGGA CGCCTATGTG
GTCAACACCG CCCGCGGCGA GGTGATCGAC GAGGAGACGC TGACCCGGCT GATCGAGTCA
GGCGACATCG CCGGCGCCGG CCTCGACGTG TTCGAGAACG AGCCCGCGGT CAATCCGAAG
CTGGTGCGGC TCGCCAAGCA CGGCAAGGTG GTCTTGATGC CGCATATGGG CTCCGCCACT
ATCGAGGGCC GGGTCGAGAT GGGCGAGAAG GTGATCATCA ACATCCGCAC CTTCCTCGAC
AACCACAAGC CGCCGGACCG CGTGCTGCCG CACATGTTGT AA
 
Protein sequence
MSVKKKPLVV VTRKLPDSIE TRMRELFDAR LNLDDEPMSP EALAEAVRTA DILVPTVTDE 
ITEEILQQPD SRLKLIANFG NGIDNINVAA AHARGITVTN TPKVLTEDTA DMTMALILAV
PRRLIEGASL LTEGRDWPGW SPTWMLGRRL GGKRLGIIGM GRIGQAVARR ARTFGLQIHY
HNRRPVAPKI ADELSATYWE SLDQMLARMD IISVNCPHTP ATFHLLSARR LKLIRKDAYV
VNTARGEVID EETLTRLIES GDIAGAGLDV FENEPAVNPK LVRLAKHGKV VLMPHMGSAT
IEGRVEMGEK VIINIRTFLD NHKPPDRVLP HML