Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0215 |
Symbol | dapF |
ID | 3971164 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 233732 |
End bp | 234598 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637923328 |
Product | diaminopimelate epimerase |
Protein accession | YP_530109 |
Protein GI | 90421739 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.388683 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0159433 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAT TGGCAAACCG CAGCTTCAGC AAGATGAACG GCATCGGCAA CGAAATCGTC GTGCTCGATC TACGCGACCA CCCGGTCGCG GTCAGCGCCG CCGATGCCCG CGCGATCGCC TCGGAGGTGC CGTACGATCA GCTGATGGTG TTGCAGCCGC CGCGCACCCC CGGCACCGAG GCCTTCGTGC GGATCTACAA CAATGACGGC TCGGAATCCT CGGCCTGCGG CAACGGCATG CGCTGCGTCG CGCGGCAGGT GTTCGCGACC TCGGCCAGCG ACGCGCTGAC CTTCGAGACC CGGGCCGGCT TGTTGAATTG CTGGCGTCCG GCGCCCAATC TTTACACCGT CGACATGGGG CCGCCGAAGC TCGGCTGGAA AGACATCCCG CTGGCGGAAG AATTTCGCGA CACCCGGTCG ATCGAATTGC AGATCGGTCC GATCGACGCG CCGGTGCTGC ACACCCCGTC GGTGGTCAGC ATGGGCAATC CGCACGCCAT CTTCTGGGTC GACGACGTCA ATGCCCACGA TCTCGCGCGT TTCGGGCCGC TGCTGGAGAA CCACCCGATC TTTCCGGAGC GCGCCAACAT CACGCTGGCG CAGATCGTCG ATCGCGACCA CATCGTGATC CGCACCTGGG AGCGCGGCGT CGGCTTGACC AAAGCCTGCG GCTCGGCGGC CTGCGCCACC GCGGTCGCCG CGGCCCGGCT GCGGCGCGTC AACCGCGTCG TGCACATCAC GCTGCCCGGC GGCGAACTCG GCATCGAATG GCGCGCAAGC GACGACCACG TGCTGATGAC CGGCCCGGCG GCGTTCGAAT TCGAAGGCCG CTTCGATCCG GCGGTGTTCG CCGCTGCTGC TTCGTGA
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Protein sequence | MNELANRSFS KMNGIGNEIV VLDLRDHPVA VSAADARAIA SEVPYDQLMV LQPPRTPGTE AFVRIYNNDG SESSACGNGM RCVARQVFAT SASDALTFET RAGLLNCWRP APNLYTVDMG PPKLGWKDIP LAEEFRDTRS IELQIGPIDA PVLHTPSVVS MGNPHAIFWV DDVNAHDLAR FGPLLENHPI FPERANITLA QIVDRDHIVI RTWERGVGLT KACGSAACAT AVAAARLRRV NRVVHITLPG GELGIEWRAS DDHVLMTGPA AFEFEGRFDP AVFAAAAS
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