Gene RPC_0183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_0183 
Symbol 
ID3971210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp200915 
End bp202318 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content66% 
IMG OID637923296 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_530077 
Protein GI90421707 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTCTT ACGATCTCGT TGTTATCGGC ACCGGTCCCG GCGGATATGT CTGCGCGATT 
CGCGCCGCCC AACTCGGCCT CAAGGTCGCC GTGGTGGAAA AGCGCGACAC CTTCGGCGGC
ACCTGCCTGA ACATCGGCTG CATGCCGTCG AAGGCGCTGC TCTACGCCTC GGAGATGTTC
GAGGAGGCCG GGCATTCCTT CGCCAAGATG GGCGTCGTCG TGCCGAAGCC ATCGCTCGAT
CTGCCGGCGA TGATGACCTT CAAGCAGCAG GGCATCGACG GCAACGTCAA GGGCGTCGAG
TTCCTGCTGA AGAAGAACAA GATCGACGCG CTGCGCGGCT CCGGCCGCGT GCTCGGCACC
GGCAAGGTCG AAGTGACAAG TGCGGACGGC AAGACGCAGA CCGTCGACGC CAAATCGATC
GTGATCGCCT CGGGCTCGAC CTACACGCCG CTGAAAGGCG TCACCGTCGA TGAGAAGCGC
ATCGTGTCGT CGACCGGCGC GCTGTCGCTC GACAAGGTGC CGGGCAAACT CTTGGTGATC
GGCGCCGGGG TGATCGGGCT CGAGCTCGGC TCGGTGTGGC GCCGGCTCGG CGCCGAAGTC
ACCGTGGTGG AATTCCTCGA TCGCATCCTG CCCGGCATGG ATGGCGAGGT GGTCAAGCAA
TTCCAGCGCA TCCTGGAAAA GCAGGGCTTC AACTTCAAGC TCGGCAGCAA GGTGACGGCG
GTGGATTCGT CGGGCGCGAC GCTGAAGGCG ACCATCGAGC CGGCCGCCGG CGGCAAGCCG
GAAACGCTGG AAGCCGACGT GGTGCTGGTG GCGATCGGAC GGATTCCCTA CACCAAGGGG
CTCGGCCTCG CCGAAGCCGG CATCACGCTC GACGAGCGCG GCCGGATCGC GATCGACGCG
CACTTCGCCA CGAGCTTAAA GGGCGTTTAT GCGATCGGCG ACGTCGTCGC CGGTCCGATG
CTGGCGCACA AGGCCGAGGA CGAGGGCGTC GCGGTCGCCG AAATCATCGC CGGCAAGGCC
GGCCATGTGA ACTACGACGT GATCCCGGGC GTGGTCTACA CCACGCCGGA AGTGTCCTCG
GTCGGCAAGA CCGAAGAGGA ATTGAAGCAG GCCGGCGTGG CCTACACGGC GGGCAAGTTT
CCGTTCACCG CCAACGGCCG CTCCAAGGTC AATCAGACCA CCGACGGTTT CGTGAAAATT
CTCGCCGACG CCAAGACCGA CCGCGTGCTC GGCGTGCATA TCGTCGGCCG CGAGGCCGGC
GAGCTGATCC ACGAGGCCGC GGTGCTGATG GAGTTCGGCG GCTCGGCGGA AGACCTGGCG
CGCACCTGCC ACGCCCATCC GACGCGCTCG GAGGCGGTCA AGGAAGCCGC GCTTGCGGTC
GGCAAACGCG CCATCCATAT GTGA
 
Protein sequence
MASYDLVVIG TGPGGYVCAI RAAQLGLKVA VVEKRDTFGG TCLNIGCMPS KALLYASEMF 
EEAGHSFAKM GVVVPKPSLD LPAMMTFKQQ GIDGNVKGVE FLLKKNKIDA LRGSGRVLGT
GKVEVTSADG KTQTVDAKSI VIASGSTYTP LKGVTVDEKR IVSSTGALSL DKVPGKLLVI
GAGVIGLELG SVWRRLGAEV TVVEFLDRIL PGMDGEVVKQ FQRILEKQGF NFKLGSKVTA
VDSSGATLKA TIEPAAGGKP ETLEADVVLV AIGRIPYTKG LGLAEAGITL DERGRIAIDA
HFATSLKGVY AIGDVVAGPM LAHKAEDEGV AVAEIIAGKA GHVNYDVIPG VVYTTPEVSS
VGKTEEELKQ AGVAYTAGKF PFTANGRSKV NQTTDGFVKI LADAKTDRVL GVHIVGREAG
ELIHEAAVLM EFGGSAEDLA RTCHAHPTRS EAVKEAALAV GKRAIHM