| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0041 |
|---|
| Symbol | |
|---|
| ID | 3971428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 46115 |
|---|
| End bp | 47596 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637923155 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_529939 |
|---|
| Protein GI | 90421569 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGGC TGCTTCGGGT GATCCGCAAT CTGGTGGCGG CGCTCGTCGC CGCCGCCGTC
GTGCTCGCGG GCGTGCTGGC ATTCAACGCC TTCCGACACG GCTCGCGGCA ATTGCAGGTC
GCAGCGGTGC CGCCGGTTCA GGTCGACGAG GCCGGCGCCG CCAAGCGGCT GTCAGAGGCG
ATCCGGTTTC GAACCATCTC CAATTTCCTC AATCCCGAGC AAGACGCCGC GGCGCTCGCC
GCGTTGCAAG CCCATATCGT GGCGAGTTTC CCGGCGTTTC ATGCCGCGGC CCAGCGCGAG
GTCGTGAACG GCAAGAGCCT GCTCTACACC TGGGAGGGCA GCGACCCGAC GCTGAAGCCG
TTCGCGCTGC TGGCGCATCA GGACGTGGTG CCGATCGCGC CGAAGACCGA ACAGGACTGG
CAGCAGCCGC CGTTCGATGG CGTCATCGCC GACGGTTACG TCTGGGGCCG CGGTTCCTGG
GACGACAAAG GCAACCTCTA CGCCATGCTG GAAGCCGCCG AGGCGATGGC CAGGCAGGGC
TTCCGTCCGA AGCGGACGGT GTATTTCGCC TTCGGCCATG ACGAAGAGGT CTCCGGCCTG
CGCGGCGCCG GGGCCATCGC CAAGCTGCTC GCCTCGCGCG GCGTGAAGCT CGATTTCGTG
CTCGACGAGG GCCTGCTGAT CACCGAGGGC ATCATGACCG GGCTGCCGCG GCCGGCGGCG
CTGATCGGCG TCGCCGAGAA GGGCTACGCC ACGCTGGTGC TGACGGCGCG GGCGACACCC
GGACATTCCT CGATGCCGCC GCGACAGACC GCGATCGGCA TGATGAGCGC GGCGCTCAGC
CATCTCGAGG ACAAAAGGCT GCCGATGCAG ATCCGCGGCA CGGTGGCGGA AATGTTCGAT
ACCCTGGCGC CGGAAATGCG CGGCATCTAT CGCGTCGTGC TGTCGAACCT GTGGCTGTTC
AAGCCGCTAT TGCTGCGCGA ATTCGAAAAG ACCGGCCCGA CCGAGGCGAT GGTGCGCACC
ACCACGGCAC TGACCATCTT CAATGCCGGC GACAAGGACA ACGTGCTGCC CGGCGTCGCC
GAGGCCAGCG TGAATTTCCG GTTGGTGCCG GGCGACACCC AGGCCAGCAT CACCGACCAC
GTCCGCGAGA CCATCGCCAA CGACAACATC GCGATTGGTG GATCCGAGGG CAATTTCGAC
CCGCCGCCGG TGACCGGCAG CAAGAGCGCG GCCTATCGGC AGCTCAACCA GACCATCCGC
GAGATCTTTC CCGACGTCGT GGTCGCGCCC GGGCTGATGG TGGCGGCCAC CGACTCGCGG
CACTATGCCG AGGTCGCCGA CAACATCCTG CGGTTTTCGC CGGTGCGGGC AACGTCGGAG
GATCTGAAGC GCTTCCACGG CACCAATGAG CGGCTCAGCA TCGCCAACTA CGCCGACATG
ATCCGATTCT ATCGGCGGCT GATCGAGAAC ACCGCGGGAT AG
|
|---|
| Protein sequence | MRRLLRVIRN LVAALVAAAV VLAGVLAFNA FRHGSRQLQV AAVPPVQVDE AGAAKRLSEA
IRFRTISNFL NPEQDAAALA ALQAHIVASF PAFHAAAQRE VVNGKSLLYT WEGSDPTLKP
FALLAHQDVV PIAPKTEQDW QQPPFDGVIA DGYVWGRGSW DDKGNLYAML EAAEAMARQG
FRPKRTVYFA FGHDEEVSGL RGAGAIAKLL ASRGVKLDFV LDEGLLITEG IMTGLPRPAA
LIGVAEKGYA TLVLTARATP GHSSMPPRQT AIGMMSAALS HLEDKRLPMQ IRGTVAEMFD
TLAPEMRGIY RVVLSNLWLF KPLLLREFEK TGPTEAMVRT TTALTIFNAG DKDNVLPGVA
EASVNFRLVP GDTQASITDH VRETIANDNI AIGGSEGNFD PPPVTGSKSA AYRQLNQTIR
EIFPDVVVAP GLMVAATDSR HYAEVADNIL RFSPVRATSE DLKRFHGTNE RLSIANYADM
IRFYRRLIEN TAG
|
|---|
| |