| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_4012 |
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| Symbol | gidA |
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| ID | 3967431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 5050606 |
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| End bp | 5052498 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637923109 |
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| Product | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA |
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| Protein accession | YP_529479 |
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| Protein GI | 90023652 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division |
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| TIGRFAM ID | [TIGR00136] glucose-inhibited division protein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.775165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.335269 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTACC CCACTCAGTA CGATGTGATC GTTATTGGCG GCGGCCACGC TGGCACCGAA
GCCTGCCTAG CTGCAGCGCG TATGGGATGT AAAACCCTTC TGCTCACCCA CAACATAGAA
ACTCTGGGGC AAATGAGCTG TAACCCCGCC ATAGGCGGCA TTGGCAAAAG CCATTTGGTA
AAAGAAATTG ATGCCCTTGG CGGCGCCATG GCGCTGGCAA CCGACAAAGG CGGCATCCAA
TTCCGCATTC TCAACAGCCG CAAAGGCCCT GCCGTGCGCG CAACCCGCGC TCAAGCAGAC
CGCGCACTTT ACAAAGCGGC TGTACGCGAA ATATTAGAAA ACCAGCCCAA TCTCGATATA
TTCCAACAGG CTGCCGACGA CTTAGTGGTT GAAGGCGAGC GCGTTACCGG CGTTACCACC
CAAATGGGTG TCACCTTCAA AGCGCCCACC GTTGTGCTTA CAGCCGGTAC CTTTTTGGGC
GGTAAAATTC ACATAGGTAT GGAGAACCAC TCAGGTGGCC GTGCAGGCGA CCCGCCCTCC
ATCGCACTAG CAAGCCGTTT GCGCGAACTA CCGCTGCGCG TAGACAGGTT AAAAACCGGC
ACCCCACCGC GTATTGACGC GCGCAGTGTG AATTTTGACG GGCTAGAAAA GCAGTGGGGC
GAAGAAAAAA CCCCAGTGAT GAGCTATATG GGCTCGCTGG CAGATCACCC CGAGCAAACC
TGTTGCTGGA TAACCCACAC CAACGCTCAA ACCCACGATT TTATTCGCAG CGGTTTCGAT
CGCTCGCCCA TGTTTACCGG CGTTATTGAA GGGGTTGGCC CGCGTTACTG CCCCTCTATC
GAAGACAAAG TGAACCGCTT TGCCGATAAA GACAGCCACC AAATATTTAT TGAGCCAGAA
GGCCTTAAAA CCCACGAGCT CTACCCTAAC GGTATATCCA CCAGTTTGCC GTTTGATGTG
CAAATGGCCT TTGTGCGCTC GATAAAGGGC TTTGAAAACG CCCATATCAC CCGTCCAGGC
TATGCTATTG AGTACGATTT TTTCGACCCA CGCGATCTGA AGTACAGCTT TGAAACAAAG
CACATCGAAG GTTTGTTCTT TGCTGGCCAA ATTAACGGCA CCACCGGCTA CGAAGAAGCT
GGCGCCCAAG GTTTGTTGGC TGGCTTAAAT GCGGCGCTTA AAGCCCAGGG CAAAGAAGCC
TGGTGCCCGC GTCGCGACGA AGCCTACATA GGTGTACTGG CAGACGATCT TATTTCTATG
GGCACCCGCG AGCCCTACCG CATGTTTACC AGCCGCGCCG AATACCGCCT ATTGCTGCGC
GAAGATAACG CCGATATGCG CTTAACCGAA AAAGGCCGCG AATTAGGCTT GGTAGATGAT
GCCCGCTGGC AAGCGTTCTG CAAAAAACGC GAAGCCATCG AGTTGGAAAC CCAGCGTATG
CGCACCACGT GGATTCAACC CAATAGCGCC GAGGCGAATG CCCTAGCCGC AAAAATGCCT
GCCGAGCTAG CACGTGAGTA CTCACTTCTA GATTTGCTCA AGCGTCCAGA GCTTACCTAC
GACGACCTAG GCAGCCTTAA AGGCGAAGCG GTAAGCGACC CGCAAGTGGC TGAGCAGGTA
GAAATTAATA CCAAGTATGC CGGCTACATC AATCGCCAAA CCGACGATAT TGAGCGTATG
CGTCAGCACG AAAACACCGT AATCCCGGTG GAATTCGACT ACATGAGCGT GGAAGGCCTC
TCTAACGAGC TTAAGCAAAA ATTGTCCGAG GCGCGTCCAG AAACATTGTC GCGCGCATCG
CGTATACCGG GTGTTACCCC TGCCGCTGTA TCACTAATTC TTATTTACCT TAAAAAACGC
GGCTTGCTTA AAAACAAAGC TGCGCTGGCA TAA
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| Protein sequence | MIYPTQYDVI VIGGGHAGTE ACLAAARMGC KTLLLTHNIE TLGQMSCNPA IGGIGKSHLV
KEIDALGGAM ALATDKGGIQ FRILNSRKGP AVRATRAQAD RALYKAAVRE ILENQPNLDI
FQQAADDLVV EGERVTGVTT QMGVTFKAPT VVLTAGTFLG GKIHIGMENH SGGRAGDPPS
IALASRLREL PLRVDRLKTG TPPRIDARSV NFDGLEKQWG EEKTPVMSYM GSLADHPEQT
CCWITHTNAQ THDFIRSGFD RSPMFTGVIE GVGPRYCPSI EDKVNRFADK DSHQIFIEPE
GLKTHELYPN GISTSLPFDV QMAFVRSIKG FENAHITRPG YAIEYDFFDP RDLKYSFETK
HIEGLFFAGQ INGTTGYEEA GAQGLLAGLN AALKAQGKEA WCPRRDEAYI GVLADDLISM
GTREPYRMFT SRAEYRLLLR EDNADMRLTE KGRELGLVDD ARWQAFCKKR EAIELETQRM
RTTWIQPNSA EANALAAKMP AELAREYSLL DLLKRPELTY DDLGSLKGEA VSDPQVAEQV
EINTKYAGYI NRQTDDIERM RQHENTVIPV EFDYMSVEGL SNELKQKLSE ARPETLSRAS
RIPGVTPAAV SLILIYLKKR GLLKNKAALA
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