| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_4006 |
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| Symbol | |
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| ID | 3967425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 5042840 |
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| End bp | 5045794 |
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| Gene Length | 2955 bp |
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| Protein Length | 984 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637923103 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_529473 |
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| Protein GI | 90023646 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000010552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.168301 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCGAT CAATAACCTT TAAACGCAGA TTGTTGCCTA TATGCATTTC TGCTGTGGCA
TTTAGTGGTA TTACATCTAG CACTATTGCC CAAGAAGAGA ATTACGAAGA AGTAATTGTT
ACCGGTATTC GTGGCGCATT AACCAGAGCC ATTGATGTTA AGCGCGATGC TGGGTCTGTT
GTGGATGCTA TTAGCGCGGA AGATATTGGT AAATTACCCG ATGCCACCAT TGCGGACTCG
CTCCAGCGTG TAACAGGTAT ACAAATTCGT CGCAGTGCTG GTGAAGGCTC CACTGTAAAC
GTTCGCGGTA TGCCGCAGGT TAATACCTTA CTTAACGGCG AGCAATTTTT AAGTGCCGGT
TCTATTACAA CTTTGCAGCC AAACTTTACA GATATTCCCG CAGAGCTTTT ATCGCGTGTG
GATGTTATTA AATCGTCAGA GGCTTCTACT TTATCTGGCG GTGTTGCAGG CACAATCGAT
CTTCGTACGC AGCGACCATT AGATCTTGCA GAAGGTTGGA CTTTTGTAGG TGCCGGTGAG
CTTTCCGATG GTTCTTACAC TGATGATAAC GGCACCAAAC TTTCTGGTTT TGCCGGTTAT
CATTCAGATG ATTTTGGTGC GTTATTAAGT GTATCTACTT CTAGTGCTAC CCTCGCAAAC
TTCCGCTACG GTATGTATAA CGATTGGTGG TTCCGCGGCT ACCAAGAAGA TGGTAACTGG
CCGGGCTGGT CTACACCCAC AGATGTAACC GGCGATGGAG ACACTAACGA CGCGATATTC
GGCACAATTG ATTATGGTGT AACTAATCGC ACATCTGAGC GAGATAGAAC AGGTATTTCA
GCAACTGTGC AATATCGTGT GAACGACAAA GTAGAAGTAT TGGGCGATGT TTTCTATACA
TCTATGGATC AATACGAGCA CACCAATGGC TTAGTAGCAG ATAACGCTTG GGCGCAATAT
GATTGGGTAT ACCCACAAAA CCCCGTTAAT CGTGGCCCGA GTGCAGACGG CAACACAGAT
AAAGATTTTT ATACTGCGTC TGTATTCGAT CTGCATGCAT TGCGCGTAAC AGCGAAAGCA
GAAAGTTTTG TAGATAAAAG AGAATCTACC AATATTAACC TGCAAACAAA TATCGATTTT
ACCGACAGCT TCCGAGCAAG TGTGCGATAT ATTCATGGCT CGGCAGAAAA TAAACACACA
GGTAATTTTG CCGATGCGTT TATTACTACC GGTGAACAGC ACGGCCTGCA AACGCGTGTA
GATAACGTAA CAGAAACCGT TAACCCTAAT GGTGAAGGCC CAGATCGCAT TGTCATACGT
GGGGATATGT CTGGTACGCA CCCTTCGTTT ACTTACCCAG AAGGTTTTGG CGATAGCATC
GAAAAATACG GCTTGGTGTC ATCGTTCTCT CATCAAAATC GCGATGAAGA ATCAAAATTA
GATGTGTTGC GCTTTGACGG CATTTTAGAT CTAAACGATA ACAACTCACT CGAGTTTGGC
TATCGTTACG GCAAGCGAGA AGTCACTCGC TACCAGTACG ATTACGTTGC GCCTTTTACT
CGTCGCGGCA TGGATGACGA GCAAATTACA GTGTATTCAA AATGGAAGGA TTCTGGTTTA
CCGGTAAATG GTGACCCAGG TGCAGGTGTG TTTGGTGACA CCATTGCTCG CACAATTCCG
TTTACAGAGC TAGATGCAAT GGGGTGGATT ACCGAAGTAA GCGATTTTGG CCCAGCACCT
AGTGACGGTC GCAGCTTTTA CTTTATTGAC CCTAAAGCCA TGGACGACGC ACTTGGCTTT
CACAATACGC TCTACCCTGG CAATGTTGCT ATTAAAGACC CAGGTAGAAG CTACGAGCTA
GACGACAAAA CGCATACCCT TTATGCACAG GCCAATTTTG AAGGCGAGTT TGGTGTACCT
TATCAAGCGA ACTTTGGTGT GCAGTACATT CGCACGTTTT TGGATGTAAC GACCAATGTA
CCGGGTGTGG AACCTATCGT TGAGGTTGAT GGCGTTGAGT ACCCTACTTT AAGCGGAACA
CCGCCACAGG ATTTAGGTGA CTCTACCGTA GAGCGTAGTT TTACCGACTT TCTACCGCGT
TTTAATATCG GCTTTGATAC TAGCGAAAAT ACAAAATTGC GTTTGGCTTA CACCAAAACT
ATGACTCAAT TAGATGCCAA TGATTTAGGC TTGGGTTTAG TTTACACCGT TAACAACAAC
GCCGACCTTG GCGTATTCCA AGCTGTAAGC GCCTCGCAAG ATGGCAACCC CTATATGGAG
CCATGGCGTG CAGAAAACTA CGACGCAACC TTCGAGTGGT ATTTTGCTGA ATCGAGTATG
GCAAGTATTG GTTTATATCG CTTAGATGTT GCCACTTCTA TAACCACAAC AGGTACGACT
ACAGCCGCAG TGCCAGATTC CGATGGCGTA ATTCGCGATG AAGATGGCGA GATAGGATTA
ACCATTCGCG ACAATACCGA CGGTGGCGTT GTGCAAGGTA TAGAGCTTGG CTATCAACAG
GCGTTCGATT TTTTGCCTGG TGCATTTAGC GGTTTAGGTA CCACGTTAAA CTACACATGG
GCAGATGGTG AAGGTGGCGA TAAAGACTTC TACGGCGCAA CCATGCCAAT GGGAGATAAC
TCCGAGCACC AGTTTAATGC AATATTGTGG TACGAAATGG ATGGGTGGCA AGCGCGTGTT
GCAATGAACT ATCGCAGCGA ACGTTATATT GGTCGCGCGT GGAACGATGG CCACCCAGCA
GCTTGGTGGT CTGCACCAAC CACGTATGTT GATGCATCGG TAAGTTACGA TATTACCGAT
GGTATAACCG TATTCCTACA GGGAACCAAT ATTACCGAAG AATACGAAGA AACCTATATG
CAGTGGCAGG ATGTAGTGGT AAACCAGAAC GTGTTTGAAG CACGTTACAA CCTAGGTGTG
CGAGCTAGAT TCTAA
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| Protein sequence | MSRSITFKRR LLPICISAVA FSGITSSTIA QEENYEEVIV TGIRGALTRA IDVKRDAGSV
VDAISAEDIG KLPDATIADS LQRVTGIQIR RSAGEGSTVN VRGMPQVNTL LNGEQFLSAG
SITTLQPNFT DIPAELLSRV DVIKSSEAST LSGGVAGTID LRTQRPLDLA EGWTFVGAGE
LSDGSYTDDN GTKLSGFAGY HSDDFGALLS VSTSSATLAN FRYGMYNDWW FRGYQEDGNW
PGWSTPTDVT GDGDTNDAIF GTIDYGVTNR TSERDRTGIS ATVQYRVNDK VEVLGDVFYT
SMDQYEHTNG LVADNAWAQY DWVYPQNPVN RGPSADGNTD KDFYTASVFD LHALRVTAKA
ESFVDKREST NINLQTNIDF TDSFRASVRY IHGSAENKHT GNFADAFITT GEQHGLQTRV
DNVTETVNPN GEGPDRIVIR GDMSGTHPSF TYPEGFGDSI EKYGLVSSFS HQNRDEESKL
DVLRFDGILD LNDNNSLEFG YRYGKREVTR YQYDYVAPFT RRGMDDEQIT VYSKWKDSGL
PVNGDPGAGV FGDTIARTIP FTELDAMGWI TEVSDFGPAP SDGRSFYFID PKAMDDALGF
HNTLYPGNVA IKDPGRSYEL DDKTHTLYAQ ANFEGEFGVP YQANFGVQYI RTFLDVTTNV
PGVEPIVEVD GVEYPTLSGT PPQDLGDSTV ERSFTDFLPR FNIGFDTSEN TKLRLAYTKT
MTQLDANDLG LGLVYTVNNN ADLGVFQAVS ASQDGNPYME PWRAENYDAT FEWYFAESSM
ASIGLYRLDV ATSITTTGTT TAAVPDSDGV IRDEDGEIGL TIRDNTDGGV VQGIELGYQQ
AFDFLPGAFS GLGTTLNYTW ADGEGGDKDF YGATMPMGDN SEHQFNAILW YEMDGWQARV
AMNYRSERYI GRAWNDGHPA AWWSAPTTYV DASVSYDITD GITVFLQGTN ITEEYEETYM
QWQDVVVNQN VFEARYNLGV RARF
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