| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3820 |
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| Symbol | |
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| ID | 3966931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4820998 |
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| End bp | 4821615 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922917 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_529287 |
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| Protein GI | 90023460 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.113202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTAATG TATTGTTAGC CGAAGATCAA AGCATGGTAC GCGGCGCACT CGCGGCATTG
TTAAATATGG AAGAAAATAT TCGCGTAGTG GCACAGGTGG AAGATGGTAA AGCTGCGCTT
GAATATTTAA ACCGCACCCA CAGCGAAACC GATGCAATAG ATATTGTACT TACCGATATT
GAAATGCCTA ACATTACAGG TATTGAGTTG GCAGAAGTAC TCGCCGAAAA ATTTCCCGAG
CTGCGCACAG TTATTGTTAC CACCTTTGGC AGAGCGGGGT ATATTCGCCG CGCACTAGCG
GCTGGGGTGT ACGGTTTTAT TTTAAAAGAT GCGCCATCAG AAATATTAGC CGAAGTGCTT
TATAAAGCCA TGGCGGGCAA GAAAACAATC GACCCCGAGT TGGCCATTGC CGCATTAGAC
GATAAAGACC CGTTAAGTGA TAAAGAGCGC AAAGCTCTGC GCTTAGCGGG CAGCGGTAAA
AAAACTGCCG AAATTGCCAA CGACCTATGC CTGTCGGAGG GCACGGTACG CAATTATTTA
TCGGAGGCTA TTTCTAAACT TAACGCCACC AACCGCATTG ATGCGGCGCG TATAGCGCGG
CAAAAAGGCT GGCTTTAG
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| Protein sequence | MINVLLAEDQ SMVRGALAAL LNMEENIRVV AQVEDGKAAL EYLNRTHSET DAIDIVLTDI
EMPNITGIEL AEVLAEKFPE LRTVIVTTFG RAGYIRRALA AGVYGFILKD APSEILAEVL
YKAMAGKKTI DPELAIAALD DKDPLSDKER KALRLAGSGK KTAEIANDLC LSEGTVRNYL
SEAISKLNAT NRIDAARIAR QKGWL
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