| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3727 |
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| Symbol | |
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| ID | 3966762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4724878 |
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| End bp | 4726119 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637922824 |
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| Product | cold shock protein |
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| Protein accession | YP_529194 |
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| Protein GI | 90023367 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.701014 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.664331 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGTT CCCGTACGGC ACTGCGCATT ATATTTTTTA TTTTGCTCCT CGACATAATG
GGCGTAAGCC TACTGTGGCC GGTGGCGGCA TTTATTGTGC AGCAATATAG CAACGATGCC
ATTATGCTTA CGGTATTAAC CGCACTGTAT TCGGCAGCGC AGTTTTTTGC CGCACCATTT
ATGGGTAGGC TAGGTGATAG TTATGGTCGG CGGCCAGTGC TTATTATTAG TTTGCTCGGT
TCTTGTATTG GCTACATTAT GTTTGGTGTG GGTGGCGCTT TGTGGGTGTT ATTAATTTCA
CGCCTATTAG ACGGGTTTAC TGCGGGCAAT CAATCTGTCG CGGGCGCTTA TATAGCAGAT
GTTTCAACAC CCGAAACTAG GGCTAAAAAT TTTACGTTGT TTGGAATGGC CTGGGGTGTT
GCATTGGTGG CTGGGCCAGC ATTGGGGGCA GTGTTTGGCG AAATAAGCCT CGCCGCGCCC
GCCTTTTTGG CTGCGACCCT CTGCTTACTG GCTGCGCTAT TAAGTTACTT TTATTTGCCA
GAATCTTTGG CTCGCGAAAA CAGAAATTCC ACGCCAATAA AATTGGCAGA CATCAACCCT
TTTACCACTA TTATTAAGCT GCTCTCCAAA CCGGTGCTAG GCTCTATATT TGTTGTACTA
ATACTGTTTA ATTTTGTTTT TAACGGTTTC AGTAGTACAG AGTCACTATA CTTAGTAGAA
AAATTTTCAG CTACACCGCT ACAACTTGGC GGGCTACTTA CTTTCGCAGG CCTTTCTCTG
GTAGCAATAC AAAAAATACT ACCGCCACTT ATTAAGCGCT TTGGCCACCA ACGCGTTGCT
GTTGTTAGCT TAATCGCTTT AGCGATAATG GCAACAATAA CATCTATCAC ACCGGCGTTT
AATCTTTTGT TTGGGGTTGT TTCATTGCGC ACTATGGCCG CTGGCTTTTT ATTTCCAATT
TTAGGTGCGC TAATGTCCTC TATGGTTACC CCCAAAGAAC AAGGCGCCTT AATGGGCGTA
AATACAGCAT TACACAGTGC TACTTATGTT TTTGGGCCAA TATGGGCGGG ACTTGTTTAC
GATCATCTTC ATGCAAGTTC GCCCTACTGG CTAGGTGCGG TAATATTACT ATTAACCGCC
CTGTATTTAT CTCGCGTGCG TTTATCACCG GTAAACCAAC CTTTAAATAA ACCAAATAAT
GACACTAGTA GCACATCTAA TTTAACACCC GCTTCAGATT AA
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| Protein sequence | MESSRTALRI IFFILLLDIM GVSLLWPVAA FIVQQYSNDA IMLTVLTALY SAAQFFAAPF
MGRLGDSYGR RPVLIISLLG SCIGYIMFGV GGALWVLLIS RLLDGFTAGN QSVAGAYIAD
VSTPETRAKN FTLFGMAWGV ALVAGPALGA VFGEISLAAP AFLAATLCLL AALLSYFYLP
ESLARENRNS TPIKLADINP FTTIIKLLSK PVLGSIFVVL ILFNFVFNGF SSTESLYLVE
KFSATPLQLG GLLTFAGLSL VAIQKILPPL IKRFGHQRVA VVSLIALAIM ATITSITPAF
NLLFGVVSLR TMAAGFLFPI LGALMSSMVT PKEQGALMGV NTALHSATYV FGPIWAGLVY
DHLHASSPYW LGAVILLLTA LYLSRVRLSP VNQPLNKPNN DTSSTSNLTP ASD
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