| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3722 |
|---|
| Symbol | |
|---|
| ID | 3966757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4710244 |
|---|
| End bp | 4710813 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637922819 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_529189 |
|---|
| Protein GI | 90023362 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAA AAGAAGAAGA TATTATTCAG TCTGCTACTA AGTTGTTTTC GGCGTTTGGT
TATCATGCGG TAGGTATAGA TACCATTATT GCTGAATCTA ATGTAGCAAA AATGACATTT
TATAAGTACT TCCCCTCTAA AGAATTGTTA ATAGAAGGTG TATTAAAGCG GCGAGATGAA
GATTTACAGG CCGGAATATT GCGCACTGTA GAATCGTGCC GTACGCCAAT GGCTAAATTA
AAAGCCATTT TTAATTGGTA CGAAAACTGG TTTTGTGGCG CAGATTTTCA TGGTTGTATG
TTTATTAAGG CATCGGAAGA GTTTCCGCGT GGCGCGACTC GCGTGCGCGA CATTATCGAG
AATTTTAAAC GTTGGCTGAT TGAGCTTATA AAGGAAATAT TACAACAGGC GGGCGCAGCT
AACGCTGCAG TATTGGCGCA ACATGTTGTA GTGGTTTTAG ATGGCCTTAC TGTGAAGTTT
AATATGGATG TGTCTGTCGC ACACACAGAA ATGGCAAATA ACTGGAAGCT TATTAAGAAA
TTGGTTCAGC TGCATATTAA AGATAAGTAA
|
|---|
| Protein sequence | MSKKEEDIIQ SATKLFSAFG YHAVGIDTII AESNVAKMTF YKYFPSKELL IEGVLKRRDE
DLQAGILRTV ESCRTPMAKL KAIFNWYENW FCGADFHGCM FIKASEEFPR GATRVRDIIE
NFKRWLIELI KEILQQAGAA NAAVLAQHVV VVLDGLTVKF NMDVSVAHTE MANNWKLIKK
LVQLHIKDK
|
|---|
| |