| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3681 |
|---|
| Symbol | |
|---|
| ID | 3966638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4664020 |
|---|
| End bp | 4664835 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637922778 |
|---|
| Product | formamidopyrimidine-DNA glycosylase |
|---|
| Protein accession | YP_529148 |
|---|
| Protein GI | 90023321 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00000425443 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0260006 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAGT TACCCGAAGT AGAAACCACC CGCCGCGGTA TACTCCCCCA CCTAGAAGGC
AAACGCGTTA AAGCCGTTAG CGTGCGCAAT CGCTCCCTGC GCTGGCCCAT CCCAGCAGAC
CTAGCCCAAC AAATTCAAAA CAAAACCCTG CGCACTATTC ACCGGCGCGG TAAATACCTA
CTGCTTGAGT TTGCCAATGG GCACGTTATT TGGCACTTGG GGATGTCTGG CAGTTTACGC
ATTATTAAGG CCGACGAACC ACCCATGGTA CACGACCACG TGGATATAGC ATTTGGCGGT
AACCTCGCCC TGCGCTACAC AGATCCGCGC CGATTTGGCG CCGTATTATG GACAAACGAA
GCCATTCTCG AGCACAAGCT ACTCAACCAC CTCGGGCCAG AACCACTAAC CGACGCATTC
AACAGCGCCT ACCTGTTCGA TAAAAGCCGC AAGCGCAGCC AAAGTGTTAA AACGTGGATT
ATGGACAGCA AGGTAGTGGT TGGGGTGGGC AACATTTACG CTAACGAAGC TTTATTTAAC
TCTGCTATTC ACCCACTAAA AGCCGCGGGT AAACTCAGCC AAAAGCAGTG CGATATTTTT
TGTAGCGAAA TTAAAAGCGT GCTTGCCAAA GCCATAGAAC AAGGCGGTAC AACGCTAAGA
GACTTTGTAG GCGGAGATGG TAAACCGGGT TATTTTGCGC AGGAACTAAA CGTATACGGC
CGTGGGGGCA AGGCCTGTAA GAAATGCCGC AAACCTCTTA CAGAAAAAAA ACTAGGGCAG
CGCACCACCG TGTACTGCAC CCATTGCCAA AAATAA
|
|---|
| Protein sequence | MPELPEVETT RRGILPHLEG KRVKAVSVRN RSLRWPIPAD LAQQIQNKTL RTIHRRGKYL
LLEFANGHVI WHLGMSGSLR IIKADEPPMV HDHVDIAFGG NLALRYTDPR RFGAVLWTNE
AILEHKLLNH LGPEPLTDAF NSAYLFDKSR KRSQSVKTWI MDSKVVVGVG NIYANEALFN
SAIHPLKAAG KLSQKQCDIF CSEIKSVLAK AIEQGGTTLR DFVGGDGKPG YFAQELNVYG
RGGKACKKCR KPLTEKKLGQ RTTVYCTHCQ K
|
|---|
| |