Gene Sde_3622 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3622 
Symbol 
ID3966579 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4595870 
End bp4596685 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content46% 
IMG OID637922719 
Productthioredoxin 
Protein accessionYP_529089 
Protein GI90023262 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1218] 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 
TIGRFAM ID[TIGR01331] 3'(2'),5'-bisphosphate nucleotidase, bacterial 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.359858 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTTAG CAACCTTACT ACCTAGTATC GAACAGCTTG CCAAACAAGC GGGTGAAGCC 
ACGCTTGCGG TTTATAAAAA GCCAGAATTG TGGGATGTAG AGCATAAAGA CGATTGCAGC
CCACTCACTC AAGCAGATAT TCAAAGCCAC AATATTATTG CCGAAGGCCT AGCCGCGCTT
ACGCCTAACA TTCCTGTGTT ATCGGAAGAA GACGACGTAC CGTCCTTTGA GGTGCGCAGC
CAATGGCAAC AGTATTGGTT AATAGACCCG TTAGATGGCA CCAAAGAATT TATTAATCGC
AAAGGCGAGT TCACTGTAAA CATCGCACTT ATTCAAAATA ATAAAGCTGT GCTTGGCGTT
GTATACGCGC CGGTGTTAGA TGTGTGTTAC ACAGGGGCAG AAGGCATTGG CGCGTTTAAA
ATAGATGCTA AAGGCAAAAC GCCACTGCGT GTAAAAAAAC TTACACAGGG CAAGCAAACA
TTGAATATTG TAGCCAGCCG CCGGCATGGC GCAGAAGAAG TAGATCGCTT ACTAGAAACT
ATAACCAGCA AGTATGGCGA ACCCCAATTA ACAAGTATGG GCAGCTCGTT AAAGTTGTGT
TTAGTGGCTG AGGGTAAAGC CGACATTTAC CCGCGCTTAG CACCTACCTG CGAATGGGAT
ACCGCCGCCT CGCAAGCTGT TGTGGAGCAA GCCGGTGGTG TAGTGCTAGA TGATCAATTT
AAACCCATGC AATACAACGC CAAACCCGAG CTGCTAAACG GCTATTTTTA TGTAATAGGC
GACCAACAAT TTGATTGGTT GGCACTGCTT AAATAA
 
Protein sequence
MNLATLLPSI EQLAKQAGEA TLAVYKKPEL WDVEHKDDCS PLTQADIQSH NIIAEGLAAL 
TPNIPVLSEE DDVPSFEVRS QWQQYWLIDP LDGTKEFINR KGEFTVNIAL IQNNKAVLGV
VYAPVLDVCY TGAEGIGAFK IDAKGKTPLR VKKLTQGKQT LNIVASRRHG AEEVDRLLET
ITSKYGEPQL TSMGSSLKLC LVAEGKADIY PRLAPTCEWD TAASQAVVEQ AGGVVLDDQF
KPMQYNAKPE LLNGYFYVIG DQQFDWLALL K