Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3622 |
Symbol | |
ID | 3966579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4595870 |
End bp | 4596685 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637922719 |
Product | thioredoxin |
Protein accession | YP_529089 |
Protein GI | 90023262 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1218] 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase |
TIGRFAM ID | [TIGR01331] 3'(2'),5'-bisphosphate nucleotidase, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.359858 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTTAG CAACCTTACT ACCTAGTATC GAACAGCTTG CCAAACAAGC GGGTGAAGCC ACGCTTGCGG TTTATAAAAA GCCAGAATTG TGGGATGTAG AGCATAAAGA CGATTGCAGC CCACTCACTC AAGCAGATAT TCAAAGCCAC AATATTATTG CCGAAGGCCT AGCCGCGCTT ACGCCTAACA TTCCTGTGTT ATCGGAAGAA GACGACGTAC CGTCCTTTGA GGTGCGCAGC CAATGGCAAC AGTATTGGTT AATAGACCCG TTAGATGGCA CCAAAGAATT TATTAATCGC AAAGGCGAGT TCACTGTAAA CATCGCACTT ATTCAAAATA ATAAAGCTGT GCTTGGCGTT GTATACGCGC CGGTGTTAGA TGTGTGTTAC ACAGGGGCAG AAGGCATTGG CGCGTTTAAA ATAGATGCTA AAGGCAAAAC GCCACTGCGT GTAAAAAAAC TTACACAGGG CAAGCAAACA TTGAATATTG TAGCCAGCCG CCGGCATGGC GCAGAAGAAG TAGATCGCTT ACTAGAAACT ATAACCAGCA AGTATGGCGA ACCCCAATTA ACAAGTATGG GCAGCTCGTT AAAGTTGTGT TTAGTGGCTG AGGGTAAAGC CGACATTTAC CCGCGCTTAG CACCTACCTG CGAATGGGAT ACCGCCGCCT CGCAAGCTGT TGTGGAGCAA GCCGGTGGTG TAGTGCTAGA TGATCAATTT AAACCCATGC AATACAACGC CAAACCCGAG CTGCTAAACG GCTATTTTTA TGTAATAGGC GACCAACAAT TTGATTGGTT GGCACTGCTT AAATAA
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Protein sequence | MNLATLLPSI EQLAKQAGEA TLAVYKKPEL WDVEHKDDCS PLTQADIQSH NIIAEGLAAL TPNIPVLSEE DDVPSFEVRS QWQQYWLIDP LDGTKEFINR KGEFTVNIAL IQNNKAVLGV VYAPVLDVCY TGAEGIGAFK IDAKGKTPLR VKKLTQGKQT LNIVASRRHG AEEVDRLLET ITSKYGEPQL TSMGSSLKLC LVAEGKADIY PRLAPTCEWD TAASQAVVEQ AGGVVLDDQF KPMQYNAKPE LLNGYFYVIG DQQFDWLALL K
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