| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3580 |
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| Symbol | |
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| ID | 3966442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4539252 |
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| End bp | 4541252 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637922677 |
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| Product | helix-turn-helix, AraC type |
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| Protein accession | YP_529047 |
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| Protein GI | 90023220 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.18181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.716334 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTTAGGC ATTCTCTAGC GATTGGGCTG GCAACAATAA CAATTATATT CTCTTGCGCG
GTTCAGGCTC AGCCGGCTGC ACGAGGCAGT CAGCCAAGTT ACACGGTTAA CTTTAAAGAT
ACCGATATTC ACGAAGTTAT TAAGTTTGTG GCCGATGCTA CGGGTAAAAC GATTGTGATC
GACCCGCGGG TTAAAGGCCG AATTAAAGTT ATTTCGCAAA CCACGGTAAA TAAAGACGAG
CTGTTTGAGC TGTTTTTAAC TATTTTAGAA GTGCACGACT TCACTGCTGT GCAGGTAGGC
GATGTTGTTC GTATTCTACC GTTAAAAGAT GCGCGCTCTT CACCTGTGCC CGTGCAGGAT
GAAAGTGATG TGGGTAATCG CGCATCCACC AACGGTTATG TAACAGAAGT TATTCAGTTA
AAAAATATTG AAGCCGCTAA AGTGTTACCT GTGTTGCGTC CACTTGTGCC ACAGCATTCT
CACTTGTCTT CTTATACTGA AAGTAACGTA ATTGTTGTAT CCGACACAGC CCCAAACATT
GCGCGCTTGC GCGACGTTAT TGAGCGTATT GATACCGCGG CACTGCCCAC CACCGAAGTT
GTGCCTCTTA AATATGCCGA TGCCGAAGAT TTAGTGGCCA CCCTCACTAA ATTGGACCGC
GGCGAAAAAC AAAGCTCTAC CCCTGTTAAC CAGTTGCAAA TAGTTGCCGA TAAACGCAAC
AACTCAGTAT TGCTAAGCGG TGAAGATATT CAGCGCAAGC GGGCCAAAGA TTTAATTCGC
AAACTAGATC GCCCGCCAGT TCAGATGGGT AATGTGCGAG TAGTTTACCT AAATTACGCC
AACGCCAAAG ATGTTGCCGC AACCTTAAGT AAAGTTGTGC AAAACATGCA GCAAATGCAA
CCTGGCGGTA AAGACAAAGG CGGTAAGGAC GGCGCCACAG TAGAAGCCGA TGAAGATACA
AACGCGCTGC TATTAACCGG CTCTGGCGAT ATGCTTAACT CGTTACTTAC CATTGTTGAG
CGCTTAGATA TAAAACGCGC ACAGGTATTG GTTGAAGCGA TTATTGTGGA CATTAACGTA
GACGCCAACA AAGAGCTTGG TGTGCAGTGG ATGTTCTCTA ACGAAAATAA CGGCACATTC
GGCGGCTCTA GCCAAGGTGA TGGCTCGTTG GGCAGTCTAG CGACTGGTAC CTTGGGTGGC
GGCACCGATG CGCTAACTAA TCTTGCTTCA GGTATAGCCG GCAATACAGG CCAATTATTA
GGTGTGGCTG GCAACAACGG CGGTGAGAAC TTTATTGCAC TGTTATCTGC ACTGCAAACC
AGCAGCGATG CCAATATTCT TTCCACGCCT TCTTTGGTTA CTATGGATAA CCAAGAAGCG
TCGATTTCTG TGGGTCAAAG TGTACCGTTC AGAACGGGCA GTTACAGCAC CACGGGTACG
ACAGGTTCGG TAGGCAACCC GTTCACTACT ATTCAGCGTG AAGACGTGGG TATAACCCTA
ACGGTTACAC CACACGTTAA CGAAGGTAAT AAAATTCTTT TGGATATCTC ACAAGAGGTG
TCCAGTATTT CTAGCTCGGT AGCAGGTAGT GCCGACTTGA TTACCAACCA AAGTAAAATT
GAAACCCAGT TGTTAGCCAA CGACGGTCAA ATTGTTATTT TAGGTGGCTT GATTCAAGAA
GACGTACAAG ATGGTGATAC CCGTGTACCG CTTTTAGGGT CTATTCCTTT GTTGGGCCAT
TTGTTTAAAT ATCAGTCTAC CAAGTTCTTA AAGAAAAACC TGATGGTATT CATTCGAGTA
AAAATAGTTA CCGATGATGA AGCCATGTAC GGTGCAACCG CCGAGAAGTA TCAATATATT
CGCGATCAGC AAATGCGCCA GCACGATAAA GGTTTGAATT TAATGAGCCG TAAAATATTG
CCAGTACTGC CCGAATTAAC GCCGTTTGAG CAGCAAGCGC TGGAAGCTGC CTTAAGCGAA
TCTGATTCCG AACAAGAGTA A
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| Protein sequence | MFRHSLAIGL ATITIIFSCA VQAQPAARGS QPSYTVNFKD TDIHEVIKFV ADATGKTIVI
DPRVKGRIKV ISQTTVNKDE LFELFLTILE VHDFTAVQVG DVVRILPLKD ARSSPVPVQD
ESDVGNRAST NGYVTEVIQL KNIEAAKVLP VLRPLVPQHS HLSSYTESNV IVVSDTAPNI
ARLRDVIERI DTAALPTTEV VPLKYADAED LVATLTKLDR GEKQSSTPVN QLQIVADKRN
NSVLLSGEDI QRKRAKDLIR KLDRPPVQMG NVRVVYLNYA NAKDVAATLS KVVQNMQQMQ
PGGKDKGGKD GATVEADEDT NALLLTGSGD MLNSLLTIVE RLDIKRAQVL VEAIIVDINV
DANKELGVQW MFSNENNGTF GGSSQGDGSL GSLATGTLGG GTDALTNLAS GIAGNTGQLL
GVAGNNGGEN FIALLSALQT SSDANILSTP SLVTMDNQEA SISVGQSVPF RTGSYSTTGT
TGSVGNPFTT IQREDVGITL TVTPHVNEGN KILLDISQEV SSISSSVAGS ADLITNQSKI
ETQLLANDGQ IVILGGLIQE DVQDGDTRVP LLGSIPLLGH LFKYQSTKFL KKNLMVFIRV
KIVTDDEAMY GATAEKYQYI RDQQMRQHDK GLNLMSRKIL PVLPELTPFE QQALEAALSE
SDSEQE
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