Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3572 |
Symbol | |
ID | 3966434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4532020 |
End bp | 4533255 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637922669 |
Product | chitinase II |
Protein accession | YP_529039 |
Protein GI | 90023212 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3297] Type II secretory pathway, component PulL |
TIGRFAM ID | [TIGR01709] general secretion pathway protein L |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.682274 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACGAGA AAATATTTGC CAGACAATTA GATAACGGCC TATGGCAGTG GCGCTTAGCC GATGAGCAAG GCAACTGGCT AAATGAAGAT TGCTTTACTG GCGATAACGA AGCGCTGGCG GAATCCTTGG GTGATCGCGC ATCGCCCGTT GTGCATCTTA TTCTGCCCGG TACAAATGTA GTGGCTACCA GTGAAACGGT AGAGCCTTCT ATTAAACGTC ATTTAGCTAA GTTACTTCCG TTTGAAATGG AAGAGCAAAT TATTGACCCA GTAGACGACA TCCATTTTGT ATTTGGCCCA GTAGAAGGCG ACCGCGTTGA AATGCTTTAC GCGCACGCAG ATTGCGTGGC GGGCGCTATT GCCTCTCTGG AAGAAGTTAA TTGCGATATT CAACGTATTT TGCCCGATTA CCTGCACCTG GTACGCGAGC CCGTTGGCGC TATTTTGGTA TTGGATGAAG GCGTACTTTA TTGCCGCACT TCAGATAACG ACGGCTTTGC AATAGATGAG TCGGCCGCTC CTATTGTGGT TAGCCAGTTA AAGCACGAGT ACGATTTTAC GGGTGTTATC GAGCTAGTAG CAGAAACAGA AGAGCTAGCG GAAGCCATGA AATCTTGGTT GCCTGCTAAA TGGTTAGATG AGAATGGCCC AGAAATACGC CTGCGTGAAG GTAACTTTTG GAGCAGTATT TCTCCGCTGC ATTTGTGCCC CACATTTAAT ATGCGTCGCG GCCGTTTTGC TCGCCAATTG CCCATCATGC GCTGGGTTAA AGATTGGAAA GTACCCGGCT ATGTAGCGGC GGCGGCTTTT GTTTTGGCTA TGGCAGCAGT AAGCCTAGAG TACTTTCAAG CAAAGGCGCA ATTTGATCGG GTGCGCTCCG AAATTTTCGC AGTGTATAAG CAAGTTGCAC CTAATGGCCG CTCTAGCGAC CCTGTGCGTG CAATGGAGTC TATGGTTAAA GGTCAGGGCG GAAAATCTGA ACCTACCAAC GTGATGATGC TTATAGACAG CACCGCAAAG GCGCTAAAAA ATACGCCTGA AGTTAATCTA ACCAGCATGC GTTATTCCGG CGATCAAAAA GAATTGCGTG TGAATTTAGA AACCAAAAAT TTCTCCGATT TAGAAACATT GCGCACAGCC ATAGCCAAAA TGGGTTTGGC CGCTGAATTG TTGCGCGTGA GTGCGCAAGG TGAAATCCAG CAAGCAAGCA TGAGTGTTGC TGAGGAAAAA TCATGA
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Protein sequence | MNEKIFARQL DNGLWQWRLA DEQGNWLNED CFTGDNEALA ESLGDRASPV VHLILPGTNV VATSETVEPS IKRHLAKLLP FEMEEQIIDP VDDIHFVFGP VEGDRVEMLY AHADCVAGAI ASLEEVNCDI QRILPDYLHL VREPVGAILV LDEGVLYCRT SDNDGFAIDE SAAPIVVSQL KHEYDFTGVI ELVAETEELA EAMKSWLPAK WLDENGPEIR LREGNFWSSI SPLHLCPTFN MRRGRFARQL PIMRWVKDWK VPGYVAAAAF VLAMAAVSLE YFQAKAQFDR VRSEIFAVYK QVAPNGRSSD PVRAMESMVK GQGGKSEPTN VMMLIDSTAK ALKNTPEVNL TSMRYSGDQK ELRVNLETKN FSDLETLRTA IAKMGLAAEL LRVSAQGEIQ QASMSVAEEK S
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