Gene Sde_3572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3572 
Symbol 
ID3966434 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4532020 
End bp4533255 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content48% 
IMG OID637922669 
Productchitinase II 
Protein accessionYP_529039 
Protein GI90023212 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3297] Type II secretory pathway, component PulL 
TIGRFAM ID[TIGR01709] general secretion pathway protein L 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.682274 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGAGA AAATATTTGC CAGACAATTA GATAACGGCC TATGGCAGTG GCGCTTAGCC 
GATGAGCAAG GCAACTGGCT AAATGAAGAT TGCTTTACTG GCGATAACGA AGCGCTGGCG
GAATCCTTGG GTGATCGCGC ATCGCCCGTT GTGCATCTTA TTCTGCCCGG TACAAATGTA
GTGGCTACCA GTGAAACGGT AGAGCCTTCT ATTAAACGTC ATTTAGCTAA GTTACTTCCG
TTTGAAATGG AAGAGCAAAT TATTGACCCA GTAGACGACA TCCATTTTGT ATTTGGCCCA
GTAGAAGGCG ACCGCGTTGA AATGCTTTAC GCGCACGCAG ATTGCGTGGC GGGCGCTATT
GCCTCTCTGG AAGAAGTTAA TTGCGATATT CAACGTATTT TGCCCGATTA CCTGCACCTG
GTACGCGAGC CCGTTGGCGC TATTTTGGTA TTGGATGAAG GCGTACTTTA TTGCCGCACT
TCAGATAACG ACGGCTTTGC AATAGATGAG TCGGCCGCTC CTATTGTGGT TAGCCAGTTA
AAGCACGAGT ACGATTTTAC GGGTGTTATC GAGCTAGTAG CAGAAACAGA AGAGCTAGCG
GAAGCCATGA AATCTTGGTT GCCTGCTAAA TGGTTAGATG AGAATGGCCC AGAAATACGC
CTGCGTGAAG GTAACTTTTG GAGCAGTATT TCTCCGCTGC ATTTGTGCCC CACATTTAAT
ATGCGTCGCG GCCGTTTTGC TCGCCAATTG CCCATCATGC GCTGGGTTAA AGATTGGAAA
GTACCCGGCT ATGTAGCGGC GGCGGCTTTT GTTTTGGCTA TGGCAGCAGT AAGCCTAGAG
TACTTTCAAG CAAAGGCGCA ATTTGATCGG GTGCGCTCCG AAATTTTCGC AGTGTATAAG
CAAGTTGCAC CTAATGGCCG CTCTAGCGAC CCTGTGCGTG CAATGGAGTC TATGGTTAAA
GGTCAGGGCG GAAAATCTGA ACCTACCAAC GTGATGATGC TTATAGACAG CACCGCAAAG
GCGCTAAAAA ATACGCCTGA AGTTAATCTA ACCAGCATGC GTTATTCCGG CGATCAAAAA
GAATTGCGTG TGAATTTAGA AACCAAAAAT TTCTCCGATT TAGAAACATT GCGCACAGCC
ATAGCCAAAA TGGGTTTGGC CGCTGAATTG TTGCGCGTGA GTGCGCAAGG TGAAATCCAG
CAAGCAAGCA TGAGTGTTGC TGAGGAAAAA TCATGA
 
Protein sequence
MNEKIFARQL DNGLWQWRLA DEQGNWLNED CFTGDNEALA ESLGDRASPV VHLILPGTNV 
VATSETVEPS IKRHLAKLLP FEMEEQIIDP VDDIHFVFGP VEGDRVEMLY AHADCVAGAI
ASLEEVNCDI QRILPDYLHL VREPVGAILV LDEGVLYCRT SDNDGFAIDE SAAPIVVSQL
KHEYDFTGVI ELVAETEELA EAMKSWLPAK WLDENGPEIR LREGNFWSSI SPLHLCPTFN
MRRGRFARQL PIMRWVKDWK VPGYVAAAAF VLAMAAVSLE YFQAKAQFDR VRSEIFAVYK
QVAPNGRSSD PVRAMESMVK GQGGKSEPTN VMMLIDSTAK ALKNTPEVNL TSMRYSGDQK
ELRVNLETKN FSDLETLRTA IAKMGLAAEL LRVSAQGEIQ QASMSVAEEK S