| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3541 |
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| Symbol | |
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| ID | 3966383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4498131 |
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| End bp | 4500449 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922638 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_529008 |
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| Protein GI | 90023181 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.489396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCAAA TTTACAATCG TATTGCCGAT GAACTCAATG TACAGCAGCG ACAGGTTGAG
GCCGCGGTGG CCCTGCTTGA TGAAGGCTCT ACCGTGCCTT TTATTTCGCG TTACCGCAAA
GAGGTTACCG GCGGGCTAGA CGATACTCAG CTGCGTAACT TAGAAGAGCG CTTAACCTAC
CTGCGCGAGA TGGAAGACCG CCGCGACACC ATTCTTAAAT CCATCGCTGA GCAAGAAAAA
CTCACCCCCG AGTTAGAGCA GCAAATTAAA GGTGCCGAGA CAAAAACACA GTTAGAAGAT
TTATACCTGC CCTACAAACC CAAGCGTCGC ACCAAAGCGC AAATTGCTCG CGAAGCAGGG
TTAGAGCCAT TAGCCGATGC TCTGTTGGCC AACCCAAGCC TGGTGCCAGA AACCGAAGCG
CAAGCCTACT TTAACGAAGA GCATAAAATT ACCGATATTA AGTCGGCGCT TGATGGCGCT
AAGCAGATTT TGATGGAGCG TTTTAGTGAA GATGCCGTTC TGCTTAACAA GATGCGTCAA
TTCCTAAAGC AAGAAGGTTA TATAAGTGCT GCCGTGGTTG AGGGCAAAGA GGCTGAGGGC
GCGAAATTCC AAGATTATTT TGAGCACAAA GAGCCGTTGG CCAATACCCC TTCGCACCGC
GCACTGGCTA TGTTCCGCGG CCGCAATGAA GGCGTGCTTA CGATGGTGCT TACCTTAGAT
AATGAGCTAG AGCCAGGTCA GCGTCACCCG TGTGAGACTA TGGTTGCCTC TCACTGGCAA
ATAGAAGACC AAGGCCGCCC TGCGGATGCA TGGCTTGCCG AAGTGGTGCG TTGGACTTGG
CGAGTAAAAT TAAGCACGCA CTTAGAAACA GACTTATTTA GTGAATTGCG CGAGCGTGCA
GAGGCGGATG CTATTGATGT ATTTGCCCAC AACCTAAAAG ACTTGTTGCT TGCAGCTCCT
GCAGGGCAAA AAGTGACTAT TGGTTTAGAC CCTGGTTTGC GCACGGGTGT AAAACTGGCG
GTTGTTGGCG CTACCGGTGA AATATTAGAT CACGGTGCTA TATTCCCTAC ACCTCCGCAA
AACCGCATCG CCGAAGCAGA AGCTGTGATT GTGGCTTTAT GTAAAAAACA TAACGTGGGC
TTAATTGCGA TTGGTAACGG TACTGCTAGC CGCGAGACCG ATAAATTTGT GGGGGATTTA
CTTAAAAAGC ACAAAGATAT TAAAGCGCAA AAAGTAATGG TGAACGAGGC GGGTGCGTCG
GTTTACTCTG CATCTGAGTT TGCTGCGAAA GAATTCCCAG ATTTGGATGT TACGATTCGC
GGCGCTATTT CCATTGCTCG TCGTCTGCAA GACCCGCTAG CCGAGCTTGT GAAAATTGAC
CCTAAATCGA TTGGTGTGGG CCAGTACCAG CACGATGTAT CACAAAGCCG TTTGGCTAAG
TCGCTAGATG CCGTAGTAGA AGATTGTGTG AACGGTGTGG GGGTGGAAAT CAACACCGCT
TCGGCGCCAC TATTGGCGCG GGTGTCGGGC CTAAGCTCTT CTATCGCCAA CAATATTGTG
GAGTTCCGCC ACAAAAACGG TGGTTTTAAA AGCCGTGAGC AACTCAAAGA AGTAAGTCGC
TTGGGGGCCA AAGCGTTTGA GCAGGCTGCC GGCTTCTTGC GTATTGCTGG GGCAGAAAAC
CCATTGGATG CCTCTGGTGT TCACCCCGAG TCGTATACGG TGGTAGAGCA AATCGCCGCG
AAAAACCAAC GCGAATTGCG CGGTTTAATT GGCGATGCGG GCTTTTTACG CAGTCTAAAA
CCTGCAGAGT ACACCAACGA GCAATTTGGT TTACCTACGG TGACCGATAT TATTGCCGAG
CTAGAAAAAC CCGGTCGCGA TCCGCGCCCA GAGTTTAAAA CGGCGCAATT CCAAGATGGT
GTTGAAACCA TAAAAGATTT GGAGCCGGGT ATGATTTTGG AAGGCACGGT AACTAACGTG
ACTAACTTCG GCGCGTTTGT CGATGTAGGT GTGCATCAAG ATGGTTTGGT ACATATTTCT
GCACTTTCAA ACACTTTTGT TAAAGACCCC CGCGAAGTGG TAAAAGCCGG CGACATTGTG
AAAGTTAAAG TGATGGAAGT GGATGTGCCG CGCAAGCGAA TCGCCATGTC TATGCGTATG
GACGATGAGC CAGGTGAAAA GGTAACAGGT CGCCCAGCTG GCGGAGCCGG TGGTCAGGGC
GCGAAACAGG CGCGTCGTCA CAACACCAAA CAGCAAGCTG CTCAGCCTTC AGGCACCATG
GCAGCACTGT TTCAGCAGGC GCTTAACAAG AAAAAGTAA
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| Protein sequence | MQQIYNRIAD ELNVQQRQVE AAVALLDEGS TVPFISRYRK EVTGGLDDTQ LRNLEERLTY
LREMEDRRDT ILKSIAEQEK LTPELEQQIK GAETKTQLED LYLPYKPKRR TKAQIAREAG
LEPLADALLA NPSLVPETEA QAYFNEEHKI TDIKSALDGA KQILMERFSE DAVLLNKMRQ
FLKQEGYISA AVVEGKEAEG AKFQDYFEHK EPLANTPSHR ALAMFRGRNE GVLTMVLTLD
NELEPGQRHP CETMVASHWQ IEDQGRPADA WLAEVVRWTW RVKLSTHLET DLFSELRERA
EADAIDVFAH NLKDLLLAAP AGQKVTIGLD PGLRTGVKLA VVGATGEILD HGAIFPTPPQ
NRIAEAEAVI VALCKKHNVG LIAIGNGTAS RETDKFVGDL LKKHKDIKAQ KVMVNEAGAS
VYSASEFAAK EFPDLDVTIR GAISIARRLQ DPLAELVKID PKSIGVGQYQ HDVSQSRLAK
SLDAVVEDCV NGVGVEINTA SAPLLARVSG LSSSIANNIV EFRHKNGGFK SREQLKEVSR
LGAKAFEQAA GFLRIAGAEN PLDASGVHPE SYTVVEQIAA KNQRELRGLI GDAGFLRSLK
PAEYTNEQFG LPTVTDIIAE LEKPGRDPRP EFKTAQFQDG VETIKDLEPG MILEGTVTNV
TNFGAFVDVG VHQDGLVHIS ALSNTFVKDP REVVKAGDIV KVKVMEVDVP RKRIAMSMRM
DDEPGEKVTG RPAGGAGGQG AKQARRHNTK QQAAQPSGTM AALFQQALNK KK
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