Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3460 |
Symbol | |
ID | 3966283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4400656 |
End bp | 4401762 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637922557 |
Product | amino acid adenylation |
Protein accession | YP_528927 |
Protein GI | 90023100 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0208] Ribonucleotide reductase, beta subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00848931 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCTCGACT GGGACACCCT AAACAACGCC AAACCCGCCC CTACTGGCAC CACAACCGAG CAACCCCGCT CTGCCCTAGC AGGCCAAGCT GCCACCCCGA ACGCGCAGGC CCCAGTTTGC GCAAGTGACA AACGCGTGAT TAACGGCCAC ACAGACATCA ACCAATTAGC GCCCTTTAAG TACCCTTGGG CGTGGGACTT TTTTATAAAC GCCAATAAAA ACCATTGGAC CCCACTGGAT ATAAACATGT CGCAGGATGT GTACGACTAC AAACACAACC TCACCGAAGC TGAGCGCCAC ATGTACGAAA ATGTGCTGTC ATACCTCACC ACCTCCGACA TTTTAGCCAT GCGCAACATT GGCCTTGCGG TGATGGAAAA AATGACCGCA CCAGAACTAC AAATATACCA AGCCCGCCAA GTGTATGAAG AAGCCCTGCA CACATGGACC TACCAACACT GCATAGAAAC CCTCGGCCTT GATCAAGGTG AAATATATAA CCGCTACCGC GTGGTGCCAG AAATAAACGC CAAAATACAA ATGGCCAACC GCAGACTAGA AAGTATTTTG CGCAGCGATA TAGACCTAAC CGACCCAGAC CAACTTAACA ATTTTATATT GGCCTATATC TTTTTTGCCG CAGTGTTTGA AGGCTGTTGG TTTTACAATG GTTTTAGCCC AATATTTGCT CTGCAGCGCC GCGGTTTAAT GAAAGGCACA GCAGAACAAC TGCAATACAT AATGCGCGAC GAAACCATGC ACTGCGCCTT TGGCATTCAA ACCGTATCGC AGATTATTAT AGAAAACTGC ACCAACATAG ATGTAGACGC AATTAAAACC ATGTGGGAAG AAGCCGACGA AGCCGAGGCA AATTACGCGC GCTATATATT ACGCGAGCCA ATTTTAGGCT ACAGCGCCAA CGACCATATA GAACAGTTTA GATTTATCGC CAACCGCCGC GCGCGCCAGC TGGGCTTAGA AGAACCCTTC CCGCAGGCTA AATGCGCACT GCCTTGGCTA GATGAGCAAG CCAATATTCG CAAAGAAAAA AACTTTTTTG AAACCCGAGT AATTGAATAC CAAGCGGGCG GACTAGAATG GGATTAA
|
Protein sequence | MLDWDTLNNA KPAPTGTTTE QPRSALAGQA ATPNAQAPVC ASDKRVINGH TDINQLAPFK YPWAWDFFIN ANKNHWTPLD INMSQDVYDY KHNLTEAERH MYENVLSYLT TSDILAMRNI GLAVMEKMTA PELQIYQARQ VYEEALHTWT YQHCIETLGL DQGEIYNRYR VVPEINAKIQ MANRRLESIL RSDIDLTDPD QLNNFILAYI FFAAVFEGCW FYNGFSPIFA LQRRGLMKGT AEQLQYIMRD ETMHCAFGIQ TVSQIIIENC TNIDVDAIKT MWEEADEAEA NYARYILREP ILGYSANDHI EQFRFIANRR ARQLGLEEPF PQAKCALPWL DEQANIRKEK NFFETRVIEY QAGGLEWD
|
| |