| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3339 |
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| Symbol | |
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| ID | 3965888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4267002 |
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| End bp | 4268027 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637922436 |
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| Product | Zn-finger, DksA/TraR C4 type |
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| Protein accession | YP_528806 |
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| Protein GI | 90022979 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
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| TIGRFAM ID | [TIGR02282] lytic murein transglycosylase B |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.000917071 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0196691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCGA CTTTAAAAAA AGTATTCTCC ACTACCGCTT TAGCGGCAGT GATTACTGCA
AGCCCGCTCG CGCTAGCAGA TTATTCCGAG CACCCAGAAG CTAAAGCATT TATTGCCAAA
ATGGTAAATG AATACGGCTT GAGCGAAAAA GAAGTGGTGC GCATTTTAAA AGATGCCAAC
AAGCAGCAAT CTATTTTGGA TGCTATTGCG CGCCCAGCGG AAAAAACCAA ACCTTGGTTT
GAGTACCGCA ATATATTTTT GGGTGAATCT CGAATAACTC AAGGCGTAGA GTTTTGGGCC
GAAAACGCCG ATACCCTTGC CAAAGCCAGT AAAGAGTTTG GTGTGCCCGA GCAAATTATT
GTGGCTATTA TTGGTGTTGA AACACGCTAC GGGCGCCACG CTGGTAGTTA TCGTGTAATA
GACGCTCTTA CTACCTTGGG GTTTGATTAC CCACCGCGGT CCACCTTTTT TGCCAAAGAG
CTCGAAAACT TCTTATTGTT GACCACCGAG CAAAAACAAA ACCCGCTAGC GCTAAAAGGC
TCTTACGCGG GGGCAATGGG CTACGGCCAG TTTATGCCAA GCAGCTATCG CGCTTACGCA
GTAGATTTTG ATGGCGATAA AAAAGCCGAT ATTTGGAACA ACCCCAAAGA CGCCATTGGC
AGCGTGGCCA ACTACTTTCG CGCCCACAAA TGGCAAACCG GCGAGCCGGT TATGGTTAGG
GCGCGCATTG CTGAGGGCTA CGACGAGTCT ATATTAGATT CGCGCTCACG GCCGTCGCTT
ACAGCAACCG AAGTGGCCGC AAAAGGCTTT ACGCCTGTCG ATGTAGAAAT ACCTGGCGAT
ACCAAGGTGA TGCCCATTGC TTACGACGGC GAAAAGGGCA AAGAATATTG GCTGGGTTAC
GATAACTTTT ACGTTATTAC TCGCTACAAT CGCAGCCATA TGTACGCGCG CGCAGTGTGG
GAGCTGAGTG AAGAGATTTT ATATCGCCAT AACAGCCCAG CGCCCGCCTC GGTGGCCACA
CCTTAA
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| Protein sequence | MFSTLKKVFS TTALAAVITA SPLALADYSE HPEAKAFIAK MVNEYGLSEK EVVRILKDAN
KQQSILDAIA RPAEKTKPWF EYRNIFLGES RITQGVEFWA ENADTLAKAS KEFGVPEQII
VAIIGVETRY GRHAGSYRVI DALTTLGFDY PPRSTFFAKE LENFLLLTTE QKQNPLALKG
SYAGAMGYGQ FMPSSYRAYA VDFDGDKKAD IWNNPKDAIG SVANYFRAHK WQTGEPVMVR
ARIAEGYDES ILDSRSRPSL TATEVAAKGF TPVDVEIPGD TKVMPIAYDG EKGKEYWLGY
DNFYVITRYN RSHMYARAVW ELSEEILYRH NSPAPASVAT P
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