| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3317 |
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| Symbol | |
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| ID | 3965866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4232058 |
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| End bp | 4235582 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922414 |
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| Product | Beta-xylosidase-like |
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| Protein accession | YP_528784 |
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| Protein GI | 90022957 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00018095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000702951 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACTTA AAGTATCACT CATAATGAGT GGGATTTTGG CCGTTTCTGG TTGCGGGGGA
TCGGGAGAGA ACAATGTCCC TAACACCGTA GCGCTAGACA CAACAACTAG TTATCCCAAC
CCCACACCCA CCATCAGCGA CAGTAGCGCA TACAGCAATG CTGCCATTCA CGACCCATCT
ATTTTGAAGG CTGTAGTTAC CGAAGGCGAA GAAAGTAAGT CTTATTACTA TGTATTTGGC
TCTCATTTAG CCGCTGCGCG TTCAGAAGAT CTAATGAATT GGACGGTTGT TTCCTCGTTA
GGCGCCAACC ATTTGGTAGA TGAAAGCCCA CTCTTTAACC ACAATTATTC CGGTGAAGCA
GCAGAAGGCA TTGCGTGGTC AGCTAACTTT ACTGGCTCTT GGGCTGCCGA AGTTATCCAG
TCTAAAGCCG ACGGAAAATA CTACTTCTAC TACAACCACT GCGCACAAGA TAACCCAAAT
ACCGTTGAAG TAGATGAGGT GTGCTGGCAC AGGTCATACA TGGGCTTGGC CGTGGCAGAT
CACCCAGAAG GGCCTTATGT AAATCAGGGC ATCTTTCTTC GTTCGGGTCA CACTAATGAA
GAGCTAGCAG GCGATTACCC TGTAGTAGAC CCCGCAACAG GCGAGAACAT AACGAGCTAT
AACCCTGCTC ACTTACCAAA TGCCATAGAC CCAGCCGTTT TTTACGATAA AAACGACAAC
CTGTGGATGA CCTACGGTTC CTATTCAGGC GGTATCTACC TGTTAGATTT GGATGAAGCC
ACAGGCATGC CAGTAGCTGG CCAAGGTTTT GGCAAGCGCA TAGCTGGTAG CGAAGGGACA
TTTAGCTCGA TTGAAGGCAG CTACGTTATT TACAGCCCTG AAAGCGATTA CTACTACTTG
TTTGTATCCT TTGGTGGTTT CGACTATCGC CAAGGCTACA ACATCCGTGT AGCGCGTTCA
CGTACACCAG AAGGCCCCTA CCTCGATGCA GCAGGCAACG ATATGGCTGC CACATGGAAT
GCAGACGCAG GTATTTGGGA AGGCGGAGCG CGCGTAATCG TATCTGTCGA TGACCAAGGT
AACCCAACTA GCGTCGACTC CAACGACTAC GGCAGTAAAC TTTTAGGTGG TTTTACTTTT
AAATCCCAAC TGGGCGACAC TTCTGCCGAA TGGGGTTACT TAGCGCCGGG CCACAACTCA
GCACTTTATG ACGAAGAAAC AGGCAAACAC CTATTAGTTA CGCACACCCG CTTCCCTGAT
ACCGGCAATG GCCACGCAGT ACGCGTACAC GAAATGTGGG TAAACAACGA CGGTTGGTTA
GTTGCATCAC CTTTACGTTA TGCCCCAATC GACGGCGACA ACCAAATAGA TTCTAGTGAT
GTAATTGGCG ACTACCGCTT GGTTATGCAA GGTGCCGAAA CAAACACCAG CGCGAACGAA
TCTATCTATG TCAAATTTAC CGATCGCGGC CGCCAAATAA CTGGTGACAT TACCGGTTCT
TACAAAGTGT TTATCGATCA GCCAGAGCGT ATTGCAATAA CCCTAGATGG TAGCTACTAC
GAAGGTGTTG CAAAATGGCA ATGGGATACC GCCGAAGAGC GTATGACCGT TGCATTTAGT
GCGACGAATA GTGATAACGA ATCTATTTTC GGTATCAAGA TGCAAGAAAA ATCTTCTGCG
GAAGTTGCTG CAGATATTGA AGCTGCACTT GCACTCCCAG CACGCATCAA AGATCGCTTG
TCTCTACCCA ACCACGCAAC TCGCTCAGCC CAAATAGCCT GGACAACCAG TGATAGCGAC
CTAGTGACTA ATACCGGCAG AGTTATTCGC CCAAGTGTTG GCGCAGGCGA CCAAAACGTA
ACCCTTACCG CTAACGTAAC GTTAAACGGC GAAACCACCA CTTACACCTA CCCCATCGAT
TTAACCGTAG CAGAGCGTGT TGAACTCAAC CGAACTGCGC ACTTTGCTTT CGAAGACGGT
TTAACCGATG ACACGATGAC TTTCGATGCG GCCATGCCAA TCGGAGATCG CCCATACAAC
ACAGGCGAAG TTGGTTACGC GGCTGGCGTT GATGGTCAAG CAGTAAGCTT AAACGGCAGC
AATGGTGTGC GTTTGCCAAA CGGTTTAATT GACAACTATA ACTACACGGT TTCTTTTTGG
ATGAATCCTA CAGTTGTTAG CCAATGGACT GCTGGCTTCT TTGGCGCAGT GGATGAATTT
GAAACAGACG CTGGTGTGTA TTTCGCAGAT CGCTGGGTGA GTTTCTTGCC AATGAGCCAC
GACGGCAACA CTATGTTGTG GAGTCATAAC CTACACAACG GCGTAGACAG CTGGTTCGAT
GCGAGTACCG GGTTGCGTAT TCCAGAAAAC GAATGGACCC ACATGGCGTT TTCCGTACAA
GAAGGCTTTG TACGCGTAAT GATTAACGGT GAAGAGCGTT TCGCAGGAGG CAACCTCGCT
AACCTTTATT TCGGTAAAGA CGGCGTATTC ACCCTTGGCG TTAATTACTG GGACGTATCT
TTTAACGGTC TAATTGACGA ATTTAAAGTG TACGACGAAG CAATGAATGC CGCGCAAGTT
AAAGCGTTAG ATATCGATAA GTTGAATGAC ACCGAATTAT TTCAAATCAT TCAAGATACG
CTTACGCTTT CTGGTGACCT AACGGCAATT ATTGATGATA TCGAGCTGCC ATTCGCCGGC
GCATTTGGCT CAGCAGTTAC TTGGGCATCT ACCGACAGCA GCGTAATCGA CCCTACTTCT
GGTCAAGTAA ACCGCCCTGT ACGCGGCCTT CCCGATGCAC CAGTAACGTT AACCGCAACC
ATCACCTTCG GTGACATGAC GGCAACAAAA GAGTTCGACA TTAACGTTAA GTCGAATACT
CCACCACAGC CTGTCGCTCG TTTTAGCTTT GAAGATGACC TAAGTGATTC TACTGGTAAC
TTTGAGGCAG GCGTTGCCGC CGATAAAGGT ATCGTTGTAC CTGCGAGCTC CGAGAACACC
TACACCACAG GCGTTTCTGG GCAAGCCATT GAGTTCTTGG GTGATGCAGG TCCCGGCGCG
AAATTACCGG ATAACCTAAT TACCGACCAT AGCTATTCAA TTTCTGTGTG GCTAAACCCA
AGCGTGAAAA CGCAGTACAC GCCAGCACTG TTTGCTTACG TGGCGGCCGA CAATTGGATC
AGCCTAGCTC CATTTGGCCC TGGTGGCGGC AACACCCTTT TGTGGGCGGG TAGCCTTGCA
TGGTATGACG GCGTTATTGG TTCGCAAATA CCTAGCGGGC AATGGTCACA CATTGTATTT
GTAATTAATT CCGGCAATTT CTCCGCTTAC TTAAATGGCG AATTAGTGAG TGAATTAACT
AATTACCCAG ACACTTTCAC CGGCAATGGC GTTTCCCAAA TGGCGTTAGC CACAAACTTC
TGGGATGTAA ATTACAACGG TTTGATGGAT GAGTTGGTTA TTTTCGATGA CCCAATCTCT
CAAGAAGATG TAAGTGAACT GTTCGCCGAA GGCGCTGCAG AATAA
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| Protein sequence | MKLKVSLIMS GILAVSGCGG SGENNVPNTV ALDTTTSYPN PTPTISDSSA YSNAAIHDPS
ILKAVVTEGE ESKSYYYVFG SHLAAARSED LMNWTVVSSL GANHLVDESP LFNHNYSGEA
AEGIAWSANF TGSWAAEVIQ SKADGKYYFY YNHCAQDNPN TVEVDEVCWH RSYMGLAVAD
HPEGPYVNQG IFLRSGHTNE ELAGDYPVVD PATGENITSY NPAHLPNAID PAVFYDKNDN
LWMTYGSYSG GIYLLDLDEA TGMPVAGQGF GKRIAGSEGT FSSIEGSYVI YSPESDYYYL
FVSFGGFDYR QGYNIRVARS RTPEGPYLDA AGNDMAATWN ADAGIWEGGA RVIVSVDDQG
NPTSVDSNDY GSKLLGGFTF KSQLGDTSAE WGYLAPGHNS ALYDEETGKH LLVTHTRFPD
TGNGHAVRVH EMWVNNDGWL VASPLRYAPI DGDNQIDSSD VIGDYRLVMQ GAETNTSANE
SIYVKFTDRG RQITGDITGS YKVFIDQPER IAITLDGSYY EGVAKWQWDT AEERMTVAFS
ATNSDNESIF GIKMQEKSSA EVAADIEAAL ALPARIKDRL SLPNHATRSA QIAWTTSDSD
LVTNTGRVIR PSVGAGDQNV TLTANVTLNG ETTTYTYPID LTVAERVELN RTAHFAFEDG
LTDDTMTFDA AMPIGDRPYN TGEVGYAAGV DGQAVSLNGS NGVRLPNGLI DNYNYTVSFW
MNPTVVSQWT AGFFGAVDEF ETDAGVYFAD RWVSFLPMSH DGNTMLWSHN LHNGVDSWFD
ASTGLRIPEN EWTHMAFSVQ EGFVRVMING EERFAGGNLA NLYFGKDGVF TLGVNYWDVS
FNGLIDEFKV YDEAMNAAQV KALDIDKLND TELFQIIQDT LTLSGDLTAI IDDIELPFAG
AFGSAVTWAS TDSSVIDPTS GQVNRPVRGL PDAPVTLTAT ITFGDMTATK EFDINVKSNT
PPQPVARFSF EDDLSDSTGN FEAGVAADKG IVVPASSENT YTTGVSGQAI EFLGDAGPGA
KLPDNLITDH SYSISVWLNP SVKTQYTPAL FAYVAADNWI SLAPFGPGGG NTLLWAGSLA
WYDGVIGSQI PSGQWSHIVF VINSGNFSAY LNGELVSELT NYPDTFTGNG VSQMALATNF
WDVNYNGLMD ELVIFDDPIS QEDVSELFAE GAAE
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