| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3295 |
|---|
| Symbol | |
|---|
| ID | 3965806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4206722 |
|---|
| End bp | 4207819 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637922392 |
|---|
| Product | putative carboxypeptidase |
|---|
| Protein accession | YP_528762 |
|---|
| Protein GI | 90022935 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.265399 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCC TAACCACTGC CCCTCTTTGC GAAAACTTGC CCCCACTGCC ACAGCGCACA
ATAGAAGAGC GTCGAAAACT TAAAATCAAG CTACCTGAAT TACTGTGGGT GGAAAAACTC
ATGCGCAAAA ACGCTGCGCA TATGCACGCC CGCACAGAGC ACACACTGCA TCACGACGGT
ATGGATTTAC CCATATACAG CTTAACCCTT GGCAGCCAGA AGCCGGCTAG TCCCACACTG
CTTATTACCG GCGGGGTGCA CGGACTGGAG CGCATTGGCA CGCAAGTGAT ATTAAGCTGG
CTGCAAACCT TGCTAGAGCG CTGCCGGTGG GATACCCACA CCAAAGCGCT GCTCGCGCAA
ATTCATATAG TTATTTTGCC GCTGGTGAAC CCTGTTGGCA TGCTTAACAA CACCCGCTCG
AATGGCAACG GCATAGACTT GAATCGCCAT GCGCCGGTGC AGGCCAACGA GAAAACACCG
TTTTTAGCCG GCGGGCACAG GCTGGGTAAT TGGCTGCCGT GGTACAGAGG TAAAACCGGC
GCCGAACTCG AGCCTGAACT AGCGGTTATG ATTAAAGTGT TTAAACGCTA TATGCAAAGC
CCTGCTACAA CACTGGGAAT GGATTTGCAC TCGGGTTTTG GCTTTCACGA TAGGCTTTGG
TTCCCCTATG CTTATAGCAA AGAGCCTATT GCCAATATTT CTGATTATGT CGCGCTTAAG
TTAATGTGGG AGCGCAACTA CCCGCACCAC AATTATTTAT TTGAACCGCA AAGCATGCAC
TACTGTACTC ACGGCGATAT TTGGGACTAC CTCTACGACT TAAATAAAGC CGAAGGTAAC
AGCCACTTTT TACCACTCAC CTTAGAAATG GGGTCGTGGA ACTGGGTAAA AAAACGCCCC
CGCCAACTAT TCAATTTTAA CGGCTTGTTT AACCCCCAAT TGCCACACCG CCGCGCGCGC
GTATTGCGCG ACCATTTGGT ACTGTTAGAT TTTTTATGCT CGGCAACACT CAACCACGAA
CAGTGGCAAC CCGATAAAAA AATGGCGGAA AGTTTTGCCC AAATGGCGCA GGGCATTTGG
TATAAGGCGC GCCAATGA
|
|---|
| Protein sequence | METLTTAPLC ENLPPLPQRT IEERRKLKIK LPELLWVEKL MRKNAAHMHA RTEHTLHHDG
MDLPIYSLTL GSQKPASPTL LITGGVHGLE RIGTQVILSW LQTLLERCRW DTHTKALLAQ
IHIVILPLVN PVGMLNNTRS NGNGIDLNRH APVQANEKTP FLAGGHRLGN WLPWYRGKTG
AELEPELAVM IKVFKRYMQS PATTLGMDLH SGFGFHDRLW FPYAYSKEPI ANISDYVALK
LMWERNYPHH NYLFEPQSMH YCTHGDIWDY LYDLNKAEGN SHFLPLTLEM GSWNWVKKRP
RQLFNFNGLF NPQLPHRRAR VLRDHLVLLD FLCSATLNHE QWQPDKKMAE SFAQMAQGIW
YKARQ
|
|---|
| |