Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3271 |
Symbol | |
ID | 3965763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4172806 |
End bp | 4175475 |
Gene Length | 2670 bp |
Protein Length | 889 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637922368 |
Product | glycosyl hydrolase |
Protein accession | YP_528738 |
Protein GI | 90022911 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0765357 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00388677 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGTTAT TTAGCAAGTA TGTATGGCAA GTGGCAGTTG CCGGAGCATT AGGTACGGTT AGTTTGCTGG GTAGTCGTTT ATACGCGCAA ACTGCAGATA CACAGCAATG GATTGATGGC ATAGCCAGCA ATATGCAGGT GCATTATCAA GTACTGCTAA ATAAGGGTGA CGGCGAATGC AGCTTGCCAA GCTTACCGCC CAGCCCCAAA TCACCATGCT CTATAGTTGA GCTTTCACTC AGCTCGCCAG ATAAGCTTGC GGCAAACGAC TTAGATGGTA ACTGGTCTAT TTACTTCAGC CAAACCGATC CCATTTATGC GCACCCAGCT GGTGAATTTA CAATCGACCA TATAAATGGC GATTTACACC GAATTCGCCC CAGCGCCAGC TACCAAGGAT TTAATGTGGG CGAAGTTAAA AAGGTGCAGT TTATTGTGGC GGGTTTAACC CTTACCGAAG CCAAAATAAT GCCCAACTAT TATGTGGTAG CAGAAGGGCA AGATAATAAA CAGGCACTAT ACAGCGAAGC CCGTGTTATC GAATCAACAC GTATTCGTAT ACACCCAGAA ACAGGGTTAG AGGAGCGACC TTTTGCAGGC GAAATAAGTA GGCAAAATTT TAAGCTGTCG CAGGCAGATA AAACGCCTTA CGCCGATGCC GCTTTTATAT TTAACGAAAA TAAAAACGTA AATAAGCTGG GATTTGTAGC GCAAGACGAA GCGCTGCGCA CAATAATACC TACGCCAACT TTTGTAATGG ACTCTGGCAA AAATATAGAT ATTAGCGCAG GTATAAACCT GCAGCTACAG GGGGTGGAGC AAGACGCAGT TGCGCCGGCA CTGGCGTGGC TACAAGCATT GGGCCTAAAG CAAAACCCTG CGGGCATGCC GTTTGTTGTG TCTGTTTCGC GGGCGAGCTT ACCGTCGCGC TCGCCAGTGG GGTCCTATCA ATTGGTGGTA TCGCCAACGC AAATTACCAT CTTTGCCCGC GAACCGGTTG GTGCGTTTTA CGGTATGCAA TCGTTGGCGA GTGTAATGAT AGCGGGCAGA AATACTTTAC CTGTGTTAAC CGTTAACGAT TCGCCTCGTT ACCCTTATCG CGGTATGCAC ATAGATGTAG GTCGTAACTT TCATTCCAAA CAACAAATAC TGGATGTATT AGATCAAATG GCGGCGTACA AGCTTAACAA GCTGCATTTG CATTTGGGTG AAGATGAAGG CTGGCGCTTG CAAATACCCA GCTTGCCAGA ACTTACTGAT GTGGGCGGTA AGCGCTGTCA CGATCCACAA GAAAACACCT GCTTATTAAT GCAGCTTGGG GCAGACGTAA GCGGCAAAAG TGAACGCGAT GGCTATTACA CTCGGCAAGA TTATATAGAG CTAGTAAAAG CTGCGAATGC GCGTCACATA CAGTTAATCC CTTCTTTTGA TATGCCCGGT CATTCGCGCG CTGTAATAAA AGCTATGGAG GCGCGTTACC GTAAATTCAT GGCCGCTGGT AATAAAAAAG CCGCTGAACA ATATTTACTT TCAGACCCAA ACGATAAAAC GCAGTACAAA AGTATTCAGT TTTATTCCGA TAACACGATT AACGCGTGCA TGGAATCTCC TTATAAATTT TTAGGCAAAG TAATAGACGA AGTAAAAGCC ATGCACAGCG AAGCGGGCCA GCCGCTTACG GTTTACCATA TAGGCGCAGA TGAAACCGCC GGTGCTTGGG CGCAATCGCC AATATGCCAA GCGTTTTTTG CCAACAACCC TTACGGTGTA GAAAATGCCA AACAGCTAGG TGCTTATTTT ATCGAGCGCG TGGCCGCATT ATTAGAAACT AAGGGTATTA AAACCGCAGG TTGGAGCGAT GGTTTAAGCC ACACTAACCC AAAAAATATG CCCGCCAAGG TGCAATCGTA TATTTGGGAT GTATTACCTT GGGGGGGCGT TGCCGAAGCA AATAAGCAAG CCAATCGAGG GTGGGATGTA GTGCTATCTC ACCCAGACGC GCTGTATTTT GACTTCCCAT ACGAGCCAGA CCCAAAAGAA GGCGGCTATT ATTGGGGCAG CCGCCATATA GATACCCACA AAGTATTTAA CTATATGCCC GGTAACTTAC CGGCTTTGGC AGAGGTATAC CCAAGCCCTA CCCAAACAGG GTTTGAAATA GCAGGCACCA CCCCATTAAA ACAAGGCGTG CAATGGGCGG GTATCCAAGG CCAGCTGTGG AGCGAAACTA TACGCAGCGA TAACGCTGTG GAATATATGA TCTTTCCGCG TTTAATTGCC TTGGCAGAGC GCGCATGGCA CGCACCAAGT TGGGAGCCGC CCTACAATTA CGAGGGCGCA ACCTATAATG CTAATAGCGG TTTATTTTCT GAAAATAAAA AAAGTGAGCG CGATAAAGCG TGGTTAAAAT TCGCAAGCGT CATTGGCTAC AAAGAATTCG TTAAGCTAGA TGCCGCCGAC ATTCACTACC GCATACCAAC GGTGGGCGCT ATTATTCAAG ACTCCATGCT ACACGCAAAT CTTGCTTACC CAGGGTTAGG TATTGAATAT AAAGAAGCCG GTAAAGATTG GCAGCCTTAC AACAAGCCAG TACAAGTAAA AACGCCGGTA CTGGTGCGCG CAAAAGCCGC AACGGGGGAT AGAAAGGGGC GTGCGTTACC TGTTGAGTAA
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Protein sequence | MALFSKYVWQ VAVAGALGTV SLLGSRLYAQ TADTQQWIDG IASNMQVHYQ VLLNKGDGEC SLPSLPPSPK SPCSIVELSL SSPDKLAAND LDGNWSIYFS QTDPIYAHPA GEFTIDHING DLHRIRPSAS YQGFNVGEVK KVQFIVAGLT LTEAKIMPNY YVVAEGQDNK QALYSEARVI ESTRIRIHPE TGLEERPFAG EISRQNFKLS QADKTPYADA AFIFNENKNV NKLGFVAQDE ALRTIIPTPT FVMDSGKNID ISAGINLQLQ GVEQDAVAPA LAWLQALGLK QNPAGMPFVV SVSRASLPSR SPVGSYQLVV SPTQITIFAR EPVGAFYGMQ SLASVMIAGR NTLPVLTVND SPRYPYRGMH IDVGRNFHSK QQILDVLDQM AAYKLNKLHL HLGEDEGWRL QIPSLPELTD VGGKRCHDPQ ENTCLLMQLG ADVSGKSERD GYYTRQDYIE LVKAANARHI QLIPSFDMPG HSRAVIKAME ARYRKFMAAG NKKAAEQYLL SDPNDKTQYK SIQFYSDNTI NACMESPYKF LGKVIDEVKA MHSEAGQPLT VYHIGADETA GAWAQSPICQ AFFANNPYGV ENAKQLGAYF IERVAALLET KGIKTAGWSD GLSHTNPKNM PAKVQSYIWD VLPWGGVAEA NKQANRGWDV VLSHPDALYF DFPYEPDPKE GGYYWGSRHI DTHKVFNYMP GNLPALAEVY PSPTQTGFEI AGTTPLKQGV QWAGIQGQLW SETIRSDNAV EYMIFPRLIA LAERAWHAPS WEPPYNYEGA TYNANSGLFS ENKKSERDKA WLKFASVIGY KEFVKLDAAD IHYRIPTVGA IIQDSMLHAN LAYPGLGIEY KEAGKDWQPY NKPVQVKTPV LVRAKAATGD RKGRALPVE
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