| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3265 |
|---|
| Symbol | |
|---|
| ID | 3965757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4165711 |
|---|
| End bp | 4166601 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637922362 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_528732 |
|---|
| Protein GI | 90022905 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000583732 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGGAACAGT TCAACTGGAA CCATTTGAAA TATTTCTACC ACGTAGCCCG CGAGGGCAGC
ATAACCAAAG CCGCCGAAAG GCTGTACGTT ACCCCGCAAA CTATCAGCTC GCAGCTCGCC
CTGCTTGAGG ATTCACTTGG CTATTCACTT TTTGACCGCC ACGGAAAACG CCTAAAACTA
AACCAAGAAG GTCAATTAGT TTTACGCTAT GCAGAAGATA TTTTTAAAAC AGGTAGAGAA
CTACTAGCCG AACTAAAAAA CGCAGAGCTA TCCACACGCC GAGTGGTATC TATTGGTATT
CTTGATTCAA TCCCCAAAAT TTTAAGCTGT CAGATATTAG ATAGGGTATA CAGTACCAGC
GAGAATATTC GTATCGTTAC CCACGAAACC GATTTTGAAC AACTGCTAGC AGATTTAGCA
TTAAATAAAC TCGACATGAT TTTGTCCGAC AGGCCCGTAC CACCTAACGT AGCAGTTAAG
GCCTATAGCA AGCTTTTGAC CACATCAAAC TTTACATTTT TTGCTACGCC TAAACGCGCC
AGAAAGTTAC GGGCCAGCTT TCCTGAGTCT TTAAATCATC AACACTTTTT AATGCCTGGC
GAAAGAAGTG TGCAATATAC GCACGTATTG TCTTGGTTTT CACGTTTAGA CTTAACACCT
ATCATTTTGG GCGAGTTTGA CGATACCGAG CTAATGAAAA TGCTTGGCCA GCAAGGCAGA
GGTATTTTTT GCGCGCCCAC CATTATCGCC AAATATATTC AGCTGCAGTA CGGCGTAAAA
TCTATTGGCA CTACAGATAA AATTCAAGAG AGCTACTACT CCATTACACC GGAAAGAAAA
ATAAAAAACC CTGTAATTGA ATTAATTCAC GATATGTACA AAGATGGATA A
|
|---|
| Protein sequence | MEQFNWNHLK YFYHVAREGS ITKAAERLYV TPQTISSQLA LLEDSLGYSL FDRHGKRLKL
NQEGQLVLRY AEDIFKTGRE LLAELKNAEL STRRVVSIGI LDSIPKILSC QILDRVYSTS
ENIRIVTHET DFEQLLADLA LNKLDMILSD RPVPPNVAVK AYSKLLTTSN FTFFATPKRA
RKLRASFPES LNHQHFLMPG ERSVQYTHVL SWFSRLDLTP IILGEFDDTE LMKMLGQQGR
GIFCAPTIIA KYIQLQYGVK SIGTTDKIQE SYYSITPERK IKNPVIELIH DMYKDG
|
|---|
| |