| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3255 |
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| Symbol | ipk |
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| ID | 3965745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4153773 |
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| End bp | 4154639 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922350 |
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| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
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| Protein accession | YP_528722 |
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| Protein GI | 90022895 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
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| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.50422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0326032 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGCAAA CAAGCCTTAC ACTGCCCGCC CCCGCCAAGC TGAACCTATT TTTGCACATT
ACCGGCCGGC GGCCCGACGG TTACCACAAC CTACAAACCG TGTTTCAGCT ATTGGATTTT
GGCGACGAAC TTACCTTTAC CCCCAACCAA AGCGGCGAAA TAACCATAAC CCCAGCCATA
GAGGGAGTAC CCCTAGAGCA AAATCTAGTA TACAAGGCGG CCAATATTTT GCGCAGCCAT
GTAAACCGGC CTGAATTGGG TGCAACAATA CACTTAACCA AACGCCTACC TATGGGCGGA
GGGATTGGCG GCGGCAGCAG TGATGCCGCC ACAACACTCG TAGGCTTAAA CTATTTGTGG
CAAACCGGCG TTAGCCCTAC CACCCTCGCA CAGCTTGGCC GCCAGCTAGG CGCAGACGTG
CCTGTTTTTG TAGAAGGTAA CAGTGCATGG GCAGAAGGCA TAGGGGAACA ATTAATAGCC
TTAGATTTAC CCCAATATTG GTATGTTGTG CTTACTCCTG CCTGTCATGT GTCCACAGTA
GAAATTTTTT CACATAAAGA TTTGACAAGG GACACTCTCG CCATTACAGT AGCGGCCTTC
TTTGAGAAGG GTGGAAAAAA CGACTGCCAA CCACTGGTTG AAAGACTTTT TCCACAGGTA
AGGGATGCGG TTGACTGGCT CAATAAATTT GGCCCAGCGA AGCTTACAGG TACGGGCGCA
AGTGTATTTG CAGCCTTCCC CTCTAAAGAT GCTGCGCAAA AAGTTTTCGC CAACAAACCA
AAACATTTGA ATGGTTTTGT AGCTCAAGGC GTTAACGAGT CACCACTGCA TCAACGCCTC
CCGGAGCAGT GTATAACTGG GGTGTAG
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| Protein sequence | MLQTSLTLPA PAKLNLFLHI TGRRPDGYHN LQTVFQLLDF GDELTFTPNQ SGEITITPAI
EGVPLEQNLV YKAANILRSH VNRPELGATI HLTKRLPMGG GIGGGSSDAA TTLVGLNYLW
QTGVSPTTLA QLGRQLGADV PVFVEGNSAW AEGIGEQLIA LDLPQYWYVV LTPACHVSTV
EIFSHKDLTR DTLAITVAAF FEKGGKNDCQ PLVERLFPQV RDAVDWLNKF GPAKLTGTGA
SVFAAFPSKD AAQKVFANKP KHLNGFVAQG VNESPLHQRL PEQCITGV
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