Gene Sde_3127 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3127 
Symbol 
ID3965527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4000789 
End bp4001475 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content47% 
IMG OID637922224 
ProductGntR family transcriptional regulator 
Protein accessionYP_528596 
Protein GI90022769 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGACA CGGCTATAGA ACAAGAAACT TCACTGTCTC GCGTAGAATT GGTATACCGC 
AAGTTGCGAG ATAACATTAT TACCAATCAG TTCCCCCCTG GTTATCAAGC TTTAGAACCG
GAGATTGCTA AACAGCTTGG TGTTAGTCGC ACACCGGTGC GCGAAGCGCT AATTCGTTTA
GAAGCTGAAA ATCTTATTCA GCTGGTTCCG CGTCGCGGTA TGCGCGTTTT GCCTTTGGTG
CCCGACGACA TAAAAGAAAT TAACGAAATT TTAACTGGCT TAGAAGTGAT GGCTGTAGAG
CTGCTTGCTA AGCAAAAGCC TGGGCGTGAT TTGCTAGAGC CGATGGAGTC GGCATTGGAT
GAGATGGATA AGTCTCTGTT AACCGGTGAT ATGGAGCTTT GGGCTGAAGC AGACGAGAAA
TTTCATCGCT TTCTTTTGGC TCTGGCTGGC AACCAACGCT TGGCTTCCAT GGCCGAAAGT
GTGCGAATTC AATCGCAGCG CTCTAGAAAA ATTACGCTTA AATTGCGCCC CTCTCCCGAG
TCGACAAACA GCGCGTACCG CAAGTTGTTA AATGCAATTG CAGCAGGCAA CTGGCAAGAG
GCGAAAGAGG TGCACTATCA ACACCGTTTG GAGGTAAGCC AAATGCTGGT AGATTTATTA
GAAAAATATC AGTTGCCGCA CCTTTAG
 
Protein sequence
MNDTAIEQET SLSRVELVYR KLRDNIITNQ FPPGYQALEP EIAKQLGVSR TPVREALIRL 
EAENLIQLVP RRGMRVLPLV PDDIKEINEI LTGLEVMAVE LLAKQKPGRD LLEPMESALD
EMDKSLLTGD MELWAEADEK FHRFLLALAG NQRLASMAES VRIQSQRSRK ITLKLRPSPE
STNSAYRKLL NAIAAGNWQE AKEVHYQHRL EVSQMLVDLL EKYQLPHL