| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3057 |
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| Symbol | |
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| ID | 3967662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3909428 |
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| End bp | 3910276 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922154 |
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| Product | branched chain amino acid aminotransferase |
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| Protein accession | YP_528526 |
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| Protein GI | 90022699 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01121] D-amino acid aminotransferase
[TIGR01122] branched-chain amino acid aminotransferase, group I |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000762588 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGTTGGT TAAACGGCAC TATTATACCT GCGAGTGAGG CTTCGGTTTC GGTGTTAGAC
CACGGCTTAC TGTATGGCGA CGGGGTGTTT GAGGGAATTC GTTTTTATAA CGGTAAAGTG
TTTAAGCTTG CTGAGCACCT ACAGCGCCTG TTTGATTCGG CAAAAATATT ACAGCTAGCT
ATGCCCTACA ATGGCCAGCA ACTTACGCGT GCAACCCAAG CGTTAATAGA CGCGTGCCAA
TGGTCCAATG GCTACATTCG TTTAGTGGTA ACCCGCGGCC AAGGGCCAAT GGGGTTAGAC
CCCCGCCCAT GCCACAGCCC TAACGTGTTT ATTATTGTGG GCCAGTTAAG TGTTGTGGGC
GATGATATTC GCAAGCGCGG TGCTAAAGTA ATTATTGCAT CTACACGCAG GCTGGGTGCC
GATGGCTTAG ATCCAAGAAT TAAAAGTTTG AATTACTTAA ACCATATACT GGCAAGAATG
GAAGCCAATG TAGCCGGTGC CGATGAGGCC ATTTTATTAA ACGCTGCGGG TAGGGTGGCA
GAAGGTTCGG CGGATAATGT ATTTGTAGTG CGTCACGGTG AATTGCTAAC GCCGCCAGTT
ATAGAAGGGG CACTGGCTGG TATTACGCGG CAAACAATTA TCGACTTGGC CAACGCGCTT
AACATTTCCT GTAAAGAAGT CGCGTTAGCG CCCTACGATT TATATACCGC CGACGAATGC
TTTTTAACTG GAACAGGGGC AGAGCTTATA CCCGTTGCAA GTGTGGATGG CCGAGAAATA
AGCCATTGCA ATGGAGAAAT AACCCAGCGC TTAAGTGAAG CTTACAAACA ACTTACTGGA
GCGAGCTAA
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| Protein sequence | MCWLNGTIIP ASEASVSVLD HGLLYGDGVF EGIRFYNGKV FKLAEHLQRL FDSAKILQLA
MPYNGQQLTR ATQALIDACQ WSNGYIRLVV TRGQGPMGLD PRPCHSPNVF IIVGQLSVVG
DDIRKRGAKV IIASTRRLGA DGLDPRIKSL NYLNHILARM EANVAGADEA ILLNAAGRVA
EGSADNVFVV RHGELLTPPV IEGALAGITR QTIIDLANAL NISCKEVALA PYDLYTADEC
FLTGTGAELI PVASVDGREI SHCNGEITQR LSEAYKQLTG AS
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