| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3046 |
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| Symbol | |
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| ID | 3967651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3894877 |
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| End bp | 3897909 |
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| Gene Length | 3033 bp |
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| Protein Length | 1010 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637922143 |
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| Product | hypothetical protein |
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| Protein accession | YP_528515 |
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| Protein GI | 90022688 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00164382 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAACC AAAGTGACAG CAAACTTGTG CCCAATTATT ATGTAGCTAT AGGCGCATCT
GCAGGCGGGT TAGAAGCCCT ACACGAGTTT GTCCAGGAGC TACCTAGCGA CAGCGGTGCT
GCTTTTATAA TCATTCAGCA TCTTTCACCC GACTTCAAAT CGGTAATGGC AGAGCTGTTA
AGCCGTCACA CCAGCATGCC AATATACAAC GCGGAAGATG GCGCTGTTGT AGAAGCTAAC
ACTATCTACC TTATTCCCGC GCGCAAAAAC ATGATGATCG CGGAGGGCAA GCTTTTACTC
GCCGACCAAA TGCCAGATAC CGGCATACAC TTTCCTATCG ATATATTTTT CCGCTCCATA
GCAGAAGATC AACACCACCA CTCTATGGGT GTAATCCTTT CTGGTACAGG GAGCGATGGC
AGCAGAGGGC TGCTCGCCAT TAAAGAGGTA GGCGGCCTCG TTTTGGTGCA AGACCCAGCG
TCGGCCAAAT TCGACGGTAT GCCTTTCAAT GCAGTGAAAA CTGGCGTGGT CGATGTGGTT
GCGTCAGCAT CAGAGCTGCC TGCTAAAATA GTAAACTATA TAACCCATCC AATTGTGAGT
GGCAGCGAAA AAGCACTTAC TAGTGCAGTT AAAAGCGATA CAGGCGCGCT TAAAGAGATT
TATCAATTAT TGCGCGAAAA AAGCAATATC GACTTTACCC AATATAAACC GGCTACCGTA
GAGCGGCGTA TAGAAAGACG TATAGGTATA AACGGGTTAA GCAGCCTACA AGAGTATTAC
AACTTTATTT TAAAGCACCC ACCGGAAATG GCCATCCTAT CGAAGGATAT GCTTATTGGC
GTAACACGGT TTTTCCGCGA TGACGAACCA TTCAAAATGC TGGAAACCAA AATCATTCCA
TCTATATTGG ATGACACCCC AGTAACAGAG CCAATTAGAG TTTGGGTTGC AGGCTGTTCA
ACAGGCGAAG AAGCCTATTC CATTGCGATA CTCTTTGACG AGGCAATGAA CGAACGCGCG
GAAGCAAGAT CGATAAAAAT ATTTGCAACA GATGTAGACC CAGATGCCAT TGCGGAAGCT
AGTGCAGGGG AGTTCAGTAC CAACATTCTT ACCGATATGA GTGAAACTCG CTTTAAAAAG
TATTTCACTC ATACATCTAG CCACGCCACT ATTGCATCCA ATATTCGGCA AATGGTGGTA
TTCGCTACGC ACAATTTAAT GAAAGACCCA CCCTTCTCTA ATACGCAACT CGCTATTTGT
CGCAACGTGC TTATTTATTT TCAGCCACCA GCCCAAAGAC GTGTTTTGTC TATGCTGCAT
TTTTCATTAA AGAAAAACGG CTACCTATTT TTAGGCAACT CAGAAACACT AGGCGATTTG
GCCTCGCATT TTGAAACTAC CCACGAGCGC AACCGCTTTT ATCGCAAAAT ATCCAATGTT
CGTAGCGTGC ATAATACTAT GTCCAATATT GGCTCAGTAA ACGCAAAAAA CCCTGCGATG
CCCAGCGTAG AGCAGCTATA CCGAAGCTAC CAACGCAATC AACCTGCATC TAGCTTTCCT
TCAATTACTG AGTCTCTTAT TCAAGATTAC GCACCACCGG CGATAGTACT GGATGGCGAC
CTAGAAATTT TACATGTATA TGGTGATGTG ACGGCCTACA CCCGGAAACT ACAACCAGGG
AAATTTAGAT CGAGCATTGA AGATGTAATA AGCCCCGACC TAGAAATTGC GGTATCAACG
GCCCTGCATC GTGCGCGCAC AGAAGAAGAC AGCGTCAAAT ACGATAACAT TCAAGTAACA
ACAGATAACG GTCAAACAGA AAATATCAAT TTACGGGTAC GCTGCGTCAA ACAAAGTAGC
GCGGCTATCC AGCTTTACTT TATTGTTATT TTTGAACCAT CCCAAAGAGT TATTACATCA
ACAGACACGT CGCTAACCTT TGACGCCAAA GATCAAGTAC AACAACGTAT TCGCGACCTA
GAACTTCAGC TGCACCAAAA GCAAGAGCAC CTGCAAGTTA TTATTGAAGA GCTCGAAACC
ACCAATGAAG AGCTGCAATC TTCCAACGAA GAATTAATGG CAGCCAACGA AGAACTGCAA
AGCACTAACG AAGAGTTGCA GTCGGTAAAC GAAGAGCTGT ACACCGTTAA CAGCGAATAC
CAAGAGAAAA TTGAAGAAAT AACGCGCATA AATACCGATT TAGACAACAT TATTAAATCG
ACAGATATAG GCATTATTTT CTTAGATAAC GCCATGCTTA TTCGCAACTA CACCCCAGCT
GCCACGCAAG CGGTGAACTT ATTACCCTCC GATATTGGCA GGCCGTTCCA TCATATTTCA
CACAAACTAC ACTACAATGG CCTATTAAAA GATGTAGCCA AGGTTATTGA GGATGGCCTG
CGAATAGAGA AAAACATTCA AACAGTACAC GGTAATATTA TGAGTATTAC ACTCACTGCT
TACATTGATG AATTCAATGT AAATAATGGT TGTGTAATTA CGCTTACCGA CAACACCGAA
AAAGTAAATT TAAAAGCTCG CCTAGTAGAC AGCTACAACG AGCTGCGAGG TACGATCAAT
ACTTCGCTGG TATCATCTAG CACTAAAGTA CAAGTACTCA TCCTTGATGA CGACCCAGAT
GATTGCCTGC TAGTTAAGCA CCAGTTAAAT GGCGACGCGC AATTAAGTGG CGATTTTCAA
GCCACTGCAG TACACACCCT AGAAGAAGCA CAAGCTCTAT TGCAAAAAAC ACACTTTGAC
GTATGTTTAG TAGATTATTA CTTGGGCAAT AGAAACGGAT TGGAACTAAT AGAAACACTA
GCAGACCCCA AATCCAGTAC TGCATTTATT GTGCTTTCTG GCGCTTTGCA AAACGCTACC
CGCGAAAAAG CGCTTGAACT TGGGGTTTAC GACGCGATAG ACAAAGCGCA CATGACACCC
TACTTGCTAG AGCGCAGCAT TCGCTACGCC ATTAGGCATA AAAAAACCGA GCTGTTCTTG
CTCGCGCAAA CGCTAAACAC ACCCACAATT TAA
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| Protein sequence | MANQSDSKLV PNYYVAIGAS AGGLEALHEF VQELPSDSGA AFIIIQHLSP DFKSVMAELL
SRHTSMPIYN AEDGAVVEAN TIYLIPARKN MMIAEGKLLL ADQMPDTGIH FPIDIFFRSI
AEDQHHHSMG VILSGTGSDG SRGLLAIKEV GGLVLVQDPA SAKFDGMPFN AVKTGVVDVV
ASASELPAKI VNYITHPIVS GSEKALTSAV KSDTGALKEI YQLLREKSNI DFTQYKPATV
ERRIERRIGI NGLSSLQEYY NFILKHPPEM AILSKDMLIG VTRFFRDDEP FKMLETKIIP
SILDDTPVTE PIRVWVAGCS TGEEAYSIAI LFDEAMNERA EARSIKIFAT DVDPDAIAEA
SAGEFSTNIL TDMSETRFKK YFTHTSSHAT IASNIRQMVV FATHNLMKDP PFSNTQLAIC
RNVLIYFQPP AQRRVLSMLH FSLKKNGYLF LGNSETLGDL ASHFETTHER NRFYRKISNV
RSVHNTMSNI GSVNAKNPAM PSVEQLYRSY QRNQPASSFP SITESLIQDY APPAIVLDGD
LEILHVYGDV TAYTRKLQPG KFRSSIEDVI SPDLEIAVST ALHRARTEED SVKYDNIQVT
TDNGQTENIN LRVRCVKQSS AAIQLYFIVI FEPSQRVITS TDTSLTFDAK DQVQQRIRDL
ELQLHQKQEH LQVIIEELET TNEELQSSNE ELMAANEELQ STNEELQSVN EELYTVNSEY
QEKIEEITRI NTDLDNIIKS TDIGIIFLDN AMLIRNYTPA ATQAVNLLPS DIGRPFHHIS
HKLHYNGLLK DVAKVIEDGL RIEKNIQTVH GNIMSITLTA YIDEFNVNNG CVITLTDNTE
KVNLKARLVD SYNELRGTIN TSLVSSSTKV QVLILDDDPD DCLLVKHQLN GDAQLSGDFQ
ATAVHTLEEA QALLQKTHFD VCLVDYYLGN RNGLELIETL ADPKSSTAFI VLSGALQNAT
REKALELGVY DAIDKAHMTP YLLERSIRYA IRHKKTELFL LAQTLNTPTI
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